R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- Baseline-class()
- calcBaseline()
- calcExpectedMutations()
- calcObservedMutations()
- calcTargetingDistance()
- calculateMutability()
- collapseClones()
- consensusSequence()
- convertNumbering()
- createBaseline()
- createMutabilityMatrix()
- createMutationDefinition()
- createRegionDefinition()
- createSubstitutionMatrix()
- createTargetingMatrix()
- createTargetingModel()
- DensityThreshold-class()
- distToNearest()
- editBaseline()
- expectedMutations()
- extendMutabilityMatrix()
- extendSubstitutionMatrix()
- findThreshold()
- GmmThreshold-class()
- groupBaseline()
- HH_S1F()
- HH_S5F()
- HKL_S1F()
- HKL_S5F()
- IMGT_SCHEMES()
- makeAverage1merMut()
- makeAverage1merSub()
- makeDegenerate5merMut()
- makeDegenerate5merSub()
- makeGraphDf()
- minNumMutationsTune()
- minNumSeqMutationsTune()
- MK_RS1NF()
- MK_RS5NF()
- MutabilityModel-class()
- MutationDefinition-class()
- MUTATION_SCHEMES()
- observedMutations()
- plotBaselineDensity()
- plotBaselineSummary()
- plotDensityThreshold()
- plotGmmThreshold()
- plotMutability()
- plotSlideWindowTune()
- plotTune()
- RegionDefinition-class()
- setRegionBoundaries()
- shazam-package()
- shazam()
- shmulateSeq()
- shmulateTree()
- slideWindowDb()
- slideWindowSeq()
- slideWindowTune()
- slideWindowTunePlot()
- summarizeBaseline()
- TargetingMatrix-class()
- TargetingModel-class()
- testBaseline()
- U5N()
- writeTargetingDistance()
R Codes
Selected R package: shazam
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