R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- apply_combat()
- calculate_fiber_fstats()
- check_rec_pres()
- clean_data()
- colMeanVars()
- compare_decompositions()
- compute_associations()
- compute_donor_props()
- compute_LR_interact()
- convert_gn()
- count_word()
- determine_ranks_tucker()
- form_tensor()
- get_all_lds_factor_plots()
- get_callouts_annot()
- get_ctype_exp_var()
- get_ctype_prop_associations()
- get_ctype_subc_prop_associations()
- get_ctype_vargenes()
- get_donor_meta()
- get_factor_exp_var()
- get_fstats_pvals()
- get_gene_modules()
- get_gene_set_vectors()
- get_indv_subtype_associations()
- get_intersecting_pathways()
- get_leading_edge_genes()
- get_lm_pvals()
- get_max_correlations()
- get_meta_associations()
- get_min_sig_genes()
- get_module_enr()
- get_normalized_variance()
- get_num_batch_ranks()
- get_one_factor()
- get_one_factor_gene_pvals()
- get_pseudobulk()
- get_real_fstats()
- get_reconstruct_errors_svd()
- get_significance_vectors()
- get_subclusters()
- get_subclust_de_hmaps()
- get_subclust_enr_dotplot()
- get_subclust_enr_fig()
- get_subclust_enr_hmap()
- get_subclust_umap()
- get_subtype_prop_associations()
- get_sums()
- ht_clusters()
- identify_sex_metadata()
- initialize_params()
- instantiate_scMinimal()
- is_GO_id()
- make_new_container()
- merge_small_clusts()
- nmf_unfolded()
- normalize_counts()
- normalize_pseudobulk()
- norm_var_helper()
- parse_data_by_ctypes()
- pca_unfolded()
- plotDEheatmap_conos()
- plot_donor_matrix()
- plot_donor_props()
- plot_donor_sig_genes()
- plot_dscore_enr()
- plot_gsea_hmap()
- plot_gsea_hmap_w_similarity()
- plot_gsea_sub()
- plot_loadings_annot()
- plot_mod_and_lig()
- plot_multi_module_enr()
- plot_rec_errors_bar_svd()
- plot_rec_errors_line_svd()
- plot_scores_by_meta()
- plot_select_sets()
- plot_stability_results()
- plot_subclust_associations()
- prep_LR_interact()
- project_new_data()
- reduce_dimensions()
- reduce_to_vargenes()
- render_multi_plots()
- reshape_loadings()
- run_fgsea()
- run_gsea_one_factor()
- run_hypergeometric_gsea()
- run_jackstraw()
- run_stability_analysis()
- run_tucker_ica()
- sample_fibers()
- scale_fontsize()
- scale_variance()
- seurat_to_scMinimal()
- shuffle_fibers()
- stack_tensor()
- stop_wrap()
- subset_scMinimal()
- test_container()
- tucker_ica_helper()
- update_params()
- vargenes_anova()
R Codes
Selected R package: scITD
Click on the specific functions, references or examples using the links on the left
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