R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- AddAzimuthResults()
- AddAzimuthScores()
- AddModuleScore()
- AggregateExpression()
- AnchorSet-class()
- AnnotateAnchors()
- as.CellDataSet()
- as.Seurat()
- as.SingleCellExperiment()
- as.sparse()
- Assay-class()
- AugmentPlot()
- AutoPointSize()
- AverageExpression()
- BarcodeInflectionsPlot()
- BGTextColor()
- BuildClusterTree()
- CalcPerturbSig()
- CalculateBarcodeInflections()
- CaseMatch()
- cc.genes()
- cc.genes.updated.2019()
- CellCycleScoring()
- Cells()
- CellsByImage()
- CellScatter()
- CellSelector()
- CollapseEmbeddingOutliers()
- CollapseSpeciesExpressionMatrix()
- ColorDimSplit()
- CombinePlots()
- contrast-theory()
- CreateSCTAssayObject()
- CustomDistance()
- CustomPalette()
- DEenrichRPlot()
- DietSeurat()
- DimHeatmap()
- DimPlot()
- DimReduc-class()
- DiscretePalette()
- DoHeatmap()
- DotPlot()
- ElbowPlot()
- ExpMean()
- ExpSD()
- ExpVar()
- FastRowScale()
- FeaturePlot()
- FeatureScatter()
- FilterSlideSeq()
- FindAllMarkers()
- FindClusters()
- FindConservedMarkers()
- FindIntegrationAnchors()
- FindMarkers()
- FindMultiModalNeighbors()
- FindNeighbors()
- FindSpatiallyVariableFeatures()
- FindSubCluster()
- FindTransferAnchors()
- FindVariableFeatures()
- FoldChange()
- fortify-Spatial()
- GetAssay()
- GetImage()
- GetIntegrationData()
- GetResidual()
- GetTissueCoordinates()
- GetTransferPredictions()
- Graph-class()
- GroupCorrelation()
- GroupCorrelationPlot()
- HoverLocator()
- HTODemux()
- HTOHeatmap()
- HVFInfo.SCTAssay()
- IFeaturePlot()
- ImageDimPlot()
- ImageFeaturePlot()
- IntegrateData()
- IntegrateEmbeddings()
- IntegrationAnchorSet-class()
- IntegrationData-class()
- ISpatialDimPlot()
- ISpatialFeaturePlot()
- JackStraw()
- JackStrawData-class()
- JackStrawPlot()
- L2CCA()
- L2Dim()
- LabelClusters()
- LabelPoints()
- LinkedPlots()
- Load10X_Spatial()
- LoadAnnoyIndex()
- LoadSTARmap()
- LocalStruct()
- LogNormalize()
- LogVMR()
- MappingScore()
- MapQuery()
- merge.SCTAssay()
- MetaFeature()
- MinMax()
- MixingMetric()
- MixscapeHeatmap()
- MixscapeLDA()
- ModalityWeights-class()
- MULTIseqDemux()
- Neighbor-class()
- NNPlot()
- NormalizeData()
- PCASigGenes()
- PercentAbove()
- PercentageFeatureSet()
- PlotClusterTree()
- PlotPerturbScore()
- PolyDimPlot()
- PolyFeaturePlot()
- PredictAssay()
- PrepLDA()
- PrepSCTFindMarkers()
- PrepSCTIntegration()
- ProjectDim()
- ProjectUMAP()
- Radius()
- Read10X()
- Read10X_h5()
- Read10X_Image()
- ReadAkoya()
- ReadMtx()
- ReadNanostring()
- ReadParseBio()
- ReadSlideSeq()
- ReadSTARsolo()
- ReadVitessce()
- ReadVizgen()
- ReadXenium()
- reexports()
- RegroupIdents()
- RelativeCounts()
- RenameCells()
- RidgePlot()
- RunCCA()
- RunICA()
- RunLDA()
- RunMarkVario()
- RunMixscape()
- RunMoransI()
- RunPCA()
- RunSLSI()
- RunSPCA()
- RunTSNE()
- RunUMAP()
- SampleUMI()
- SaveAnnoyIndex()
- ScaleData()
- ScaleFactors()
- ScoreJackStraw()
- SCTAssay-class()
- SCTransform()
- SCTResults()
- SelectIntegrationFeatures()
- SetIntegrationData()
- SetQuantile()
- Seurat-class()
- Seurat-package()
- SeuratCommand-class()
- SeuratTheme()
- SingleCorPlot()
- SingleDimPlot()
- SingleExIPlot()
- SingleImageMap()
- SingleImagePlot()
- SingleRasterMap()
- SingleSpatialPlot()
- SlideSeq-class()
- SpatialImage-class()
- SpatialPlot()
- SplitObject()
- STARmap-class()
- subset.AnchorSet()
- SubsetByBarcodeInflections()
- TopCells()
- TopFeatures()
- TopNeighbors()
- TransferAnchorSet-class()
- TransferData()
- UpdateSCTAssays()
- UpdateSymbolList()
- VariableFeaturePlot()
- VisiumV1-class()
- VizDimLoadings()
- VlnPlot()
R Codes
Selected R package: Seurat
Click on the specific functions, references or examples using the links on the left
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