R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- all_subset()
- anova_filter()
- anova_test()
- applyFilt()
- as.isobaricpepData()
- as.lipidData()
- as.metabData()
- as.multiData()
- as.nmrData()
- as.pepData()
- as.proData()
- as.seqData()
- as.trelliData.edata()
- as.trelliData()
- bpquant()
- bpquant_mod()
- column_matches_exact()
- combine_lipidData()
- combine_techreps()
- complete_mols()
- cor_result()
- create_comparisonDF()
- custom_filter()
- custom_sampnames()
- cv_filter()
- DESeq2_wrapper()
- diffexp_seq()
- dim_reduction()
- dispersion_est()
- dot-is_edata()
- edata_replace()
- edata_summary()
- edata_transform()
- edgeR_wrapper()
- find_fmeta_cnames()
- fit_surv()
- fmeta_matches()
- get_check_names()
- get_comparisons()
- get_data_class()
- get_data_info()
- get_data_norm()
- get_data_scale()
- get_data_scale_orig()
- get_edata_cname()
- get_emeta_cname()
- get_fdata_cname()
- get_filters()
- get_filter_type()
- get_group_DF()
- get_group_formula()
- get_group_table()
- get_isobaric_info()
- get_isobaric_norm()
- get_lsmeans()
- get_meta_info()
- get_nmr_info()
- get_nmr_norm()
- get_pred_grid()
- get_spans_params()
- group_comparison_anova()
- group_comparison_imd()
- group_designation()
- gtest_filter()
- gtest_heatmap()
- imdanova_filter()
- imd_anova()
- imd_test()
- los()
- mad_transform()
- make_volcano_plot_df()
- mean_center()
- median_center()
- missingval_result()
- molecule_filter()
- nonmissing_per_group()
- normalize_global()
- normalize_global_basic()
- normalize_isobaric()
- normalize_loess()
- normalize_nmr()
- normalize_quantile()
- normRes_tests()
- plot-corRes()
- plot-customFilt()
- plot-cvFilt()
- plot-dataRes()
- plot-dimRes()
- plot-imdanovaFilt()
- plot-isobaricnormRes()
- plot-isobaricpepData()
- plot-lipidData()
- plot-metabData()
- plot-moleculeFilt()
- plot-naRes()
- plot-nmrData()
- plot-nmrnormRes()
- plot-normRes()
- plot-pepData()
- plot-proData()
- plot-proteomicsFilt()
- plot-rmdFilt()
- plot-RNAFilt()
- plot-seqData()
- plot-SPANSRes()
- plot-totalCountFilt()
- plot.statRes()
- plot_km()
- pmartR()
- pmartR_filter_worker()
- ppp()
- ppp_rip()
- pquant()
- prep_flags()
- pre_imdanova_melt()
- print-customFilt()
- print-cvFilt()
- print-dataRes()
- print-imdanovaFilt()
- print-lipidData()
- print-metabData()
- print-moleculeFilt()
- print-normRes()
- print-pepData()
- print-proData()
- print-proteomicsFilt()
- print-rmdFilt()
- print-RNAFilt()
- print-seqData()
- print-totalCountFilt()
- print.customFilterSummary()
- print.cvFilterSummary()
- print.imdanovaFilterSummary()
- print.moleculeFilterSummary()
- print.proteomicsFilterSummary()
- print.rmdFilterSummary()
- print.RNAFiltSummary()
- print.totalCountFiltSummary()
- protein_quant()
- proteomics_filter()
- p_adjustment_anova()
- qrollup()
- reexports()
- replace_nas()
- replace_zeros()
- report_dataRes()
- rip()
- rmd_conversion()
- rmd_filter()
- RNA_filter()
- rrollup()
- run_group_meancor()
- run_kurtosis()
- run_mad()
- run_prop_missing()
- run_skewness()
- set_check_names()
- set_data_info()
- set_filter()
- set_isobaric_info()
- set_meta_info()
- set_nmr_info()
- spans_make_distribution()
- spans_procedure()
- statRes-class()
- statres_barplot()
- statRes_output()
- statres_volcano_plot()
- summary-isobaricnormRes()
- summary-nmrnormRes()
- summary-omicsData()
- summary-pmartR-results()
- summary-trelliData()
- summary.customFilt()
- summary.cvFilt()
- summary.imdanovaFilt()
- summary.moleculeFilt()
- summary.proteomicsFilt()
- summary.rmdFilt()
- summary.RNAFilt()
- summary.totalCountFilt()
- summary_km()
- surv_designation()
- take_diff()
- total_count_filter()
- trelli_abundance_boxplot()
- trelli_abundance_heatmap()
- trelli_abundance_histogram()
- trelli_foldchange_bar()
- trelli_foldchange_boxplot()
- trelli_foldchange_heatmap()
- trelli_foldchange_volcano()
- trelli_missingness_bar()
- trelli_panel_by()
- trelli_precheck()
- trelli_pvalue_filter()
- vector_replace()
- voom_wrapper()
- zrollup()
- zscore_transform()
R Codes
- applyFilt.R
- as.multiData.R
- as.omicsData.R
- as.trelliData.R
- bpquant.R
- combine_lipidData.R
- combine_techreps.R
- cor_result.R
- custom_sampnames.R
- dim_reduction.R
- dopar.R
- edata_replace.R
- edata_summary.R
- edata_transform.R
- filter_objects.R
- filter_summary.R
- get_comparisons.R
- group_designation.R
- helper_fn.R
- imd_anova.R
- missingval_result.R
- MSnSet2pepData.R
- nonmissing_per_group.R
- normalize_global.R
- normalize_isobaric.R
- normalize_loess.R
- normalize_nmr.R
- normalize_quantile.R
- normRes_tests.R
- norm_funcs.R
- pipe.R
- plot_fns.R
- pmartR.R
- pre_imdanova_melt.R
- print_data_objects.R
- print_filter_objects.R
- protein_quant.R
- RcppExports.R
- report_dataRes.R
- results_summary.R
- rmd_conversion.R
- seqData_wrappers.R
- spans.R
- statRes_class.R
- subset_funcs.R
- summary_isobaricnormRes.R
- summary_nmrnormRes.R
- summary_pmartR.R
- summary_trelliData.R
- survival.R
- surv_designation.R
- trelliPlots.R
Selected R package: pmartR
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