R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- AbstractCBS()
- append.AbstractCBS()
- as.CBS.DNAcopy()
- as.data.frame.AbstractCBS()
- as.data.frame.CBS()
- as.DNAcopy.CBS()
- bootstrapTCNandDHByRegion.PairedPSCBS()
- c.CBS()
- callAB.PairedPSCBS()
- callAllelicBalanceByDH.PairedPSCBS()
- callAmplifications.CBS()
- callCopyNeutral.PairedPSCBS()
- callCopyNeutralByTCNofAB.PairedPSCBS()
- callGainsAndLosses.CBS()
- callGNL.PairedPSCBS()
- callLOH.PairedPSCBS()
- callOutliers.CBS()
- callROH.PairedPSCBS()
- callSegmentationOutliers()
- CBS()
- dropChangePoints.AbstractCBS()
- dropRegions.AbstractCBS()
- estimateDeltaAB.PairedPSCBS()
- estimateDeltaABBySmallDH.PairedPSCBS()
- estimateDeltaCN.PairedPSCBS()
- estimateDeltaLOH.PairedPSCBS()
- estimateDeltaLOHByMinC1ForNonAB.PairedPSCBS()
- estimateKappa.PairedPSCBS()
- estimateKappaByC1Density.PairedPSCBS()
- estimateStandardDeviation.CBS()
- exampleData()
- extractMinorMajorCNs.PairedPSCBS()
- extractSegmentMeansByLocus.CBS()
- extractTCNAndDHs.PairedPSCBS()
- findLargeGaps()
- findNeutralCopyNumberState()
- gapsToSegments.data.frame()
- getBootstrapLocusSets.PairedPSCBS()
- getCallStatistics.CBS()
- getChromosomes.AbstractCBS()
- getFractionOfGenomeLost.CBS()
- getLocusData.AbstractCBS()
- getSampleName.AbstractCBS()
- getSegments.AbstractCBS()
- getSegments.PSCBS()
- getSmoothLocusData.CBS()
- hclustCNs.AbstractCBS()
- installDNAcopy()
- joinSegments.CBS()
- load.AbstractCBS()
- mergeNonCalledSegments.CBS()
- mergeThreeSegments.AbstractCBS()
- mergeTwoSegments.AbstractCBS()
- mergeTwoSegments.PairedPSCBS()
- nbrOfChangePoints.AbstractCBS()
- nbrOfChromosomes.AbstractCBS()
- nbrOfLoci.AbstractCBS()
- nbrOfSegments.AbstractCBS()
- Non-documented_objects()
- NonPairedPSCBS()
- normalizeTotalCNs.AbstractCBS()
- PairedPSCBS()
- ploidy.AbstractCBS()
- plotTracks.AbstractCBS()
- plotTracks.CBS()
- plotTracks.PairedPSCBS()
- pruneByDP.AbstractCBS()
- pruneByHClust.AbstractCBS()
- pruneBySdUndo.CBS()
- PSCBS-package()
- PSCBS()
- randomSeed()
- report.AbstractCBS()
- resetSegments.AbstractCBS()
- Restructuring_AbstractCBS_objects()
- save.AbstractCBS()
- segmentByCBS()
- segmentByNonPairedPSCBS()
- segmentByPairedPSCBS()
- setSampleName.AbstractCBS()
- testROH.numeric()
- updateMeans.AbstractCBS()
- updateMeansTogether.AbstractCBS()
- weightedQuantile()
- writeSegments.CBS()
- writeSegments.PSCBS()
R Codes
- 000.R
- 006.fixVarArgs.R
- 999.DEPRECATED.R
- 999.NonDocumentedObjects.R
- 999.package.R
- AbstractCBS.clearCalls.R
- AbstractCBS.HCLUST.R
- AbstractCBS.PLOT.R
- AbstractCBS.PRUNE.R
- AbstractCBS.R
- AbstractCBS.REPORT.R
- AbstractCBS.RESTRUCT.R
- callSegmentationOutliers.R
- CBS.CALL.R
- CBS.EXTS.R
- CBS.IO.R
- CBS.joinSegments.R
- CBS.PLOT,many.R
- CBS.PLOT.R
- CBS.PRUNE.R
- CBS.R
- CBS.RESTRUCT.R
- CBS.SMOOTH.R
- CBS.updateMeansTogether.R
- CNA.EXTS.R
- DNAcopy.EXTS.R
- drawLevels.DNAcopy.R
- exampleData.R
- findLargeGaps.R
- findNeutralCopyNumberState.R
- gapsToSegments.R
- installDNAcopy.R
- NonPairedPSCBS.R
- PairedPSCBS.applyByRegion.R
- PairedPSCBS.BOOT.R
- PairedPSCBS.BOOT.sets.R
- PairedPSCBS.CALL.R
- PairedPSCBS.callAB.R
- PairedPSCBS.callCopyNeutral.R
- PairedPSCBS.callGNL.R
- PairedPSCBS.callLOH.R
- PairedPSCBS.callROH.R
- PairedPSCBS.estimateDeltaAB.R
- PairedPSCBS.estimateDeltaLOH.R
- PairedPSCBS.estimateKappa.R
- PairedPSCBS.extractSegmentDataByLocus.R
- PairedPSCBS.EXTS.R
- PairedPSCBS.EXTS3.R
- PairedPSCBS.PLOT,many.R
- PairedPSCBS.PLOT.R
- PairedPSCBS.PLOT2.R
- PairedPSCBS.PRUNE.R
- PairedPSCBS.R
- PairedPSCBS.RESTRUCT.R
- PairedPSCBS.unTumorBoost.R
- PairedPSCBS.updateMeans.R
- PairedPSCBS.updateMeansTogether.R
- prememoize.R
- PSCBS.IO.R
- PSCBS.isLocallyPhased.R
- PSCBS.R
- PSCBS.RESTRUCT.R
- randomSeed.R
- segmentByCBS.R
- segmentByNonPairedPSCBS.R
- segmentByPairedPSCBS.R
- testROH.R
- utils.R
- weightedQuantile.R
- writeWIG.R
- zzz.R
Selected R package: PSCBS
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