R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- anoles()
- centrarchidae()
- checkConvergence()
- computeESS()
- continueMCMC()
- estimateTimeMCMC()
- extractCorrelation()
- fastSimmap()
- getStartPointFromPosterior()
- likelihoodFunction()
- logAnalyzer()
- makePrior()
- mergePosterior()
- mergeSimmap()
- plotPrior()
- plotRatematrix()
- plotRootValue()
- print.ratematrix_multi_chain()
- print.ratematrix_multi_mcmc()
- print.ratematrix_prior_function()
- print.ratematrix_prior_sample()
- print.ratematrix_single_chain()
- print.ratematrix_single_mcmc()
- ratematrix()
- ratematrixJointMCMC()
- ratematrixMCMC()
- readMCMC()
- readMCMC_Mk()
- samplePrior()
- simRatematrix()
- testRatematrix()
R Codes
- calcNodeToNode.R
- calcNodeToTip.R
- calcNodeToTipNode.R
- checkConvergence.R
- checkHeidelTest.R
- checkHPD.R
- check_phy_list.R
- computeESS.R
- continueMCMC.R
- dataset_anoles.R
- dataset_centrarchidae.R
- estimateTimeMCMC.R
- extractCorrelation.R
- fastSimmap.R
- getEllipseMatrix.R
- getStartPointFromPosterior.R
- hastingsDensity.R
- likelihoodFunction.R
- logAnalyzer.R
- logDensityIWish.R
- logDensityMvNorm.R
- logLikNode.R
- logLikPrunningMCMC.R
- logLikSingleRegime.R
- makeDataTips.R
- makePrior.R
- makePriorIWish.R
- makePropIWish.R
- makePropMean.R
- makePropMeanForMult.R
- makePropMeanForMultList.R
- makePropMeanList.R
- makePropMultSigma.R
- makePropMultSigmaList.R
- makePropSingleSigma.R
- makePropSingleSigmaList.R
- mergePosterior.R
- mergeSimmap.R
- multiplierProposal.R
- multRegimeJointMCMC.R
- multRegimeMCMC.R
- mvLogLik.R
- plotPrior.R
- plotRatematrix.R
- plotRootValue.R
- print.ratematrix_multi_chain.R
- print.ratematrix_multi_mcmc.R
- print.ratematrix_prior_function.R
- print.ratematrix_prior_sample.R
- print.ratematrix_single_chain.R
- print.ratematrix_single_mcmc.R
- priorDensityVcvBarnard.R
- ratematrix-package.R
- ratematrixJointMCMC.R
- ratematrixMCMC.R
- RcppExports.R
- readMCMC.R
- readMultRegimeMCMC.R
- readSingleRegimeMCMC.R
- riwish.R
- samplePrior.R
- samplePriorSeparationLimits.R
- sampleTreeClade.R
- simRatematrix.R
- singleRegimeMCMC.R
- slideWindow.R
- slideWindowPositive.R
- testRatematrix.R
- writeToFile.R
- writeToMultFile.R
Selected R package: ratematrix
Click on the specific functions, references or examples using the links on the left
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