R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- ancestral()
- Anolis.data()
- Balaenopteridae()
- BGB.examples()
- BICompare()
- build_network.BipartiteEvol()
- Calomys()
- Caprimulgidae()
- Caprimulgidae_ClaDS2()
- Cetacea()
- Cetacea_clades()
- ClaDS0_example()
- co2()
- co2_res()
- coccolithophore()
- CreateClassObject()
- CreateGeobyClassObject()
- CreateGeoObject()
- CreateGeoObject_BioGeoBEARS()
- createModel()
- createModelCoevolution()
- d13c()
- define_species.BipartiteEvol()
- delineate_phylotypes()
- fitTipData-methods()
- fitTipData()
- fit_bd()
- fit_ClaDS()
- fit_ClaDS0()
- fit_coal_cst()
- fit_coal_var()
- fit_env()
- fit_sgd()
- fit_t_comp()
- fit_t_comp_subgroup()
- fit_t_env()
- fit_t_pl()
- fit_t_standard()
- foraminifera()
- getDataLikelihood-methods()
- getDataLikelihood()
- getMAPS_ClaDS()
- getMAPS_ClaDS0()
- getTipDistribution-methods()
- getTipDistribution()
- GIC()
- gic_criterion()
- greenalgae()
- InfTemp()
- JSDtree()
- JSDtree_cluster()
- JSDt_cluster()
- landplant()
- likelihood_bd()
- likelihood_coal_cst()
- likelihood_coal_var()
- likelihood_sgd()
- likelihood_subgroup_model()
- likelihood_t_DD()
- likelihood_t_DD_geog()
- likelihood_t_env()
- likelihood_t_MC()
- likelihood_t_MC_geog()
- lines.fit_t.env()
- make_gen.BipartiteEvol()
- mantel_test()
- mantel_test_nbpartners()
- modelSelection-methods()
- modelSelection()
- MPhiFFT()
- mycorrhizal_network()
- ostracoda()
- PhenotypicACDC-class()
- PhenotypicADiag-class()
- PhenotypicBM-class()
- PhenotypicDD-class()
- PhenotypicGMM-class()
- PhenotypicModel-class()
- PhenotypicOU-class()
- PhenotypicPM-class()
- Phocoenidae()
- phyl.pca_pl()
- Phyllostomidae()
- Phyllostomidae_genera()
- phylosignal_network()
- phylosignal_sub_network()
- pi_estimator()
- plot.fit_t.env()
- plot_BICompare()
- plot_ClaDS0_chains()
- plot_ClaDS_chains()
- plot_ClaDS_phylo()
- plot_div.BipartiteEvol()
- plot_dtt()
- plot_fit_bd()
- plot_fit_env()
- plot_net.BipartiteEvol()
- plot_phylosignal_sub_network()
- plot_prob_dtt()
- plot_spectR()
- Posdef()
- prob_dtt()
- radiolaria()
- redalgae()
- RPANDA-package()
- sealevel()
- silica()
- sim.BipartiteEvol()
- sim.convergence.geo()
- sim.divergence.geo()
- simulateTipData-methods()
- simulateTipData()
- sim_ClaDS()
- sim_env_bd()
- sim_MCBD()
- sim_sgd()
- sim_t_comp()
- sim_t_env()
- sim_t_tworegime()
- spectR()
- spectR_t()
- theta_estimator()
R Codes
- aPhenotypicModel.class.R
- base_sgd.R
- BICompare.R
- CreateBioGeoB_Object_subclade.R
- CreateClassObject.R
- CreateGeobyClassObject.R
- CreateGeoObject.R
- CreateGeoObject_BioGeoBEARS.R
- createModel.R
- CreateSMatrix.R
- DDexp.rescale.geog.R
- DDexp.rescale.R
- DDexpMulti_geo_ADiag.R
- DDexpMulti_geo_ADiag_ME.R
- DDexpMulti_nogeo_ADiag.R
- DDexpMulti_nogeo_ADiag_ME.R
- DDexp_geo_ADiag.R
- DDexp_geo_ADiag_ME.R
- DDexp_nogeo_ADiag.R
- DDexp_nogeo_ADiag_ME.R
- DDlin.rescale.geog.R
- DDlin.rescale.R
- DDlinMulti_geo_ADiag.R
- DDlinMulti_geo_ADiag_ME.R
- DDlinMulti_nogeo_ADiag.R
- DDlinMulti_nogeo_ADiag_ME.R
- DDlin_geo_ADiag.R
- DDlin_geo_ADiag_ME.R
- DDlin_nogeo_ADiag.R
- DDlin_nogeo_ADiag_ME.R
- delineate_phylotypes.R
- fitTipData.R
- fit_bd.R
- fit_ClaDS.R
- fit_ClaDS0.R
- fit_coal_cst.R
- fit_coal_var.R
- fit_env.R
- fit_sgd.R
- fit_t_comp.R
- fit_t_comp_subgroup.R
- fit_t_env.R
- fit_t_pl.R
- fit_t_standard.R
- full.R
- getDataLikelihood.R
- getMAPS_ClaDS.R
- getMAPS_ClaDS0.R
- getTipDistribution.R
- GIC.R
- integrate.R
- JSDtree.R
- JSDtree_cluster.R
- JSDt_cluster.R
- likelihood_bd.R
- likelihood_coal_cst.R
- likelihood_coal_cst_mod.R
- likelihood_coal_exp_mod.R
- likelihood_coal_var.R
- likelihood_sgd.R
- likelihood_subgroup_model.R
- likelihood_t_DD.R
- likelihood_t_DD_geog.R
- likelihood_t_env.R
- likelihood_t_MC.R
- likelihood_t_MC_geog.R
- mantel_test.R
- mantel_test_nbpartners.R
- MC.rescale.R
- MC.rescale_geog.R
- MC_geo_PM.R
- MC_geo_PM_ME.R
- MC_nogeo_ADiag.R
- MC_nogeo_ADiag_ME.R
- MC_twoS_PM.R
- MC_twoS_PM_geo.R
- MC_twoS_PM_geo_ME.R
- MC_twoS_PM_ME.R
- misc_functions.R
- modelSelection.R
- MPhiAbstract.class.R
- MPhiFFT.class.R
- pblm.R
- Phi.R
- phyl.pca_pl.R
- phylosignal_network.R
- phylosignal_sub_network.R
- pi_estimator.R
- pi_per_site.R
- plot_BICompare.R
- plot_BipartiteEvol.R
- plot_ClaDS0_chains.R
- plot_ClaDS_chains.R
- plot_ClaDS_phylo.R
- plot_dtt.R
- plot_fit_bd.R
- plot_fit_env.R
- plot_phylosignal_sub_network.R
- plot_prob_dtt.R
- plot_spectR.R
- print.fit.bd.R
- print.fit.env.R
- print.fit_pl.R
- print.fit_t.env.R
- prob_dtt.R
- proposal.R
- Psi.R
- ReconcileGeoObjectSMatrix.R
- resortGeoObject.R
- resortSMatrix.R
- seg_sites_fasta.R
- sim.BipartiteEvol.R
- sim.convergence.geo.R
- sim.divergence.geo.R
- simulateTipData.R
- sim_ClaDS.R
- sim_MCBD.R
- sim_sgd.R
- sim_t_comp.R
- sim_t_env.R
- sim_t_tworegime.R
- spectR.R
- spectR_t.R
- stratified_BGB_to_tables.R
- theta_estimator.R
- trimSimmap.R
- utils.R
- utils_BipartiteEvol.R
Selected R package: RPANDA
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