R Packages that start with:
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Functions
- addWeak()
- alexaNMF()
- as.data.frame-mutationCounts-method()
- as.data.frame-mutationSignatures-method()
- as.data.frame-mutSignExposures-method()
- as.list-mutationSignatures-method()
- as.list-mutFrameworkParams-method()
- as.matrix-mutationCounts-method()
- as.mutation.counts()
- as.mutation.signatures()
- as.mutsign.exposures()
- attachContext()
- attachMutType()
- bootstrapCancerGenomes()
- cbind2()
- chihJenNMF()
- coerceObj-methods()
- countMutTypes()
- custom_cssls()
- custom_fcnnls()
- decipherMutationalProcesses()
- deconvoluteMutCounts()
- evaluateStability()
- extractSignatures()
- extractXvarlinkData()
- filterOutIterations()
- filterSNV()
- frequencize()
- getCosmicSignatures()
- getCounts()
- getFwkParam()
- getMutationTypes()
- getSampleIdentifiers()
- getSignatureIdentifiers()
- getTestRunArgs()
- importVCFfiles()
- leadZeros()
- matchSignatures()
- msigPlot()
- mutationCounts-class()
- mutationCounts-show()
- mutationSignatures-class()
- mutationSignatures-show()
- mutFrameworkParams-class()
- mutFrameworkParams-show()
- mutSigData()
- mutSignatures-package()
- mutSignExposures-class()
- mutSignExposures-show()
- plotMutTypeProfile()
- plotSignExposures()
- prelimProcessAssess()
- processVCFdata()
- removeMismatchMut()
- removeWeak()
- resolveMutSignatures()
- revCompl()
- setFwkParam()
- setMutClusterParams()
- silhouetteMLB()
- simplifySignatures()
- sortByMutations()
- sub-mutationCounts-numeric-ANY-ANY-method()
- sub-mutationSignatures-numeric-ANY-ANY-method()
- sub-mutSignExposures-numeric-ANY-ANY-method()
- table2df()
R Codes
Selected R package: mutSignatures
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