R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- addAccessibilityShift()
- addMotifSet()
- annotateTiles()
- callOpenTiles-methods()
- differentialsToGRanges()
- dot-counts_plot_default_theme()
- dot-gene_plot_theme()
- exampleBlackList()
- exampleCellColData()
- exampleFragments()
- extractRegion()
- filterCoAccessibleLinks()
- finalModelObject()
- getCellPopMatrix()
- getCoAccessibleLinks()
- getDifferentialAccessibleTiles()
- getPopFrags()
- getSampleTileMatrix()
- GRangesToString()
- plotConsensus()
- plotRegion()
- singlePopulationConsensusTiles()
- singlePopulationSampleTileMatrix()
- StringsToGRanges()
- subsetMOCHAObject()
- youden_threshold()
R Codes
- addAccessibilityShift.R
- addMotifSet.R
- annotateTiles.R
- calculate_intensities.R
- callOpenTiles.R
- callTilesBySample.R
- coverageFiles.R
- co_accessibility.R
- determine_dynamic_range.R
- dynamic_bins.R
- estimate_differential_accessibility.R
- extractRegion.R
- filterCoAccessibleLinks.R
- getCellPopMatrix.R
- getCoAccessibleLinks.R
- getDifferentialAccessibleTiles.R
- getPopFrags.R
- getSampleTileMatrix.R
- make_prediction.R
- models.R
- plotConsensus.R
- plotRegion.R
- plottingUtils.R
- singlePopulationConsensusTiles.R
- singlePopulationSampleTileMatrix.R
- subsetMOCHAObject.R
- two_part.R
- utils.R
- zi_spearman.R
Selected R package: MOCHA
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