R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- adhocGene.DE.Gene.10x()
- adhocGene.DE.PSI.10x()
- adhocGene.PlotDEValues.10x()
- adhocGene.PlotSJPosition.10x()
- adhocGene.TabulateExpression.Gene.10x()
- adhocGene.TabulateExpression.PSI.10x()
- AnnotateGenes.10x()
- AnnotateSJ.10x()
- AnnoVolcanoPlot()
- AssignModality()
- BioPathways.10x()
- BioPathways()
- BioPathways.Plot.10x()
- BioPathways.Plot()
- CheckAlignment.10x()
- CheckAlignment.Exp()
- CheckAlignment()
- CheckAlignment.PSI.Exp()
- CheckAlignment.PSI()
- CheckAlignment.SJ()
- CompareExpr()
- CompareValues.Exp()
- CompareValues.Exp.Spliced()
- CompareValues.Genes.10x()
- CompareValues()
- CompareValues.PSI()
- CompareValues.SJ.10x()
- ComputePSI.A3SS()
- ComputePSI.A5SS()
- ComputePSI.AFE()
- ComputePSI.ALE()
- ComputePSI.MXE()
- ComputePSI()
- ComputePSI.RI()
- ComputePSI.SE()
- CountEvents()
- CreateMarvelObject.10x()
- CreateMarvelObject()
- DetectEvents.AFE.NegStrand()
- DetectEvents.AFE()
- DetectEvents.AFE.PosStrand()
- DetectEvents.ALE.NegStrand()
- DetectEvents.ALE()
- DetectEvents.ALE.PosStrand()
- DetectEvents()
- FilterGenes.10x()
- FindPTC.A3SS.NegStrand()
- FindPTC.A3SS.PosStrand()
- FindPTC.A5SS.NegStrand()
- FindPTC.A5SS.PosStrand()
- FindPTC()
- FindPTC.RI.NegStrand()
- FindPTC.RI.PosStrand()
- FindPTC.SE.NegStrand()
- FindPTC.SE.PosStrand()
- IsoSwitch.10x()
- IsoSwitch()
- IsoSwitch.PlotExpr()
- ModalityChange()
- ParseGTF()
- PctASE()
- PlotDEValues.Exp.Global()
- PlotDEValues.Exp.Spliced()
- PlotDEValues.Genes.10x()
- PlotDEValues()
- PlotDEValues.PSI.Distance()
- PlotDEValues.PSI.Mean.g2vsg1()
- PlotDEValues.PSI.Mean()
- PlotDEValues.SJ.10x()
- PlotPctExprCells.Genes.10x()
- PlotPctExprCells.SJ.10x()
- PlotValues.Exp()
- PlotValues()
- PlotValues.PCA.CellGroup.10x()
- PlotValues.PCA.Gene.10x()
- PlotValues.PCA.PSI.10x()
- PlotValues.PSI()
- PropModality.Bar()
- PropModality.Doughnut()
- PropModality()
- PropPTC()
- RunPCA.Exp()
- RunPCA()
- RunPCA.PSI()
- SubsetCrypticA3SS()
- SubsetSamples()
- TransformExpValues()
- ValidateSJ.10x()
R Codes
- Script_DROPLET_01_CREATE_MARVEL_OBJECT.R
- Script_DROPLET_02_PREPROCESS_1_AnnotateGenes.R
- Script_DROPLET_02_PREPROCESS_2_AnnotateSJ.R
- Script_DROPLET_02_PREPROCESS_3_ValidateSJ.R
- Script_DROPLET_02_PREPROCESS_4_FilterGenes.R
- Script_DROPLET_02_PREPROCESS_5_CheckAlignment.R
- Script_DROPLET_03_EXPLORE_EXPRESSION_1_Gene.R
- Script_DROPLET_03_EXPLORE_EXPRESSION_2_SJ.R
- Script_DROPLET_04_DE_1_SJ.R
- Script_DROPLET_04_DE_2_Gene.R
- Script_DROPLET_04_DE_3_VolcanoPlot_SJ.R
- Script_DROPLET_04_DE_4_VolcanoPlot_Gene.R
- Script_DROPLET_05_DE_5_IsoSwitch.R
- Script_DROPLET_05_DE_6_1_GO.R
- Script_DROPLET_05_DE_6_2_GO_Plot.R
- Script_DROPLET_07_ADHOC_PLOT_PCA_1_PlotFeatures.R
- Script_DROPLET_07_ADHOC_PLOT_PCA_2_PlotValues_PSI.R
- Script_DROPLET_07_ADHOC_PLOT_PCA_3_PlotValues_Gene.R
- Script_DROPLET_09_ADHOC_GENE_1_TabulateExpression_Gene.R
- Script_DROPLET_09_ADHOC_GENE_2_TabulateExpression_PSI.R
- Script_DROPLET_09_ADHOC_GENE_3_DE_Gene.R
- Script_DROPLET_09_ADHOC_GENE_4_DE_PSI.R
- Script_DROPLET_09_ADHOC_GENE_5_PlotDEValues.R
- Script_DROPLET_09_ADHOC_GENE_6_PlotSJPositions.R
- Script_PLATE_01_CREATE_MARVEL_OBJECT.R
- Script_PLATE_02_DETECT_EVENTS_0.R
- Script_PLATE_02_DETECT_EVENTS_1_0_ALE.R
- Script_PLATE_02_DETECT_EVENTS_1_1_ALE_PosStrand.R
- Script_PLATE_02_DETECT_EVENTS_1_2_ALE_NegStrand.R
- Script_PLATE_02_DETECT_EVENTS_2_0_AFE.R
- Script_PLATE_02_DETECT_EVENTS_2_1_AFE_PosStrand.R
- Script_PLATE_02_DETECT_EVENTS_2_2_AFE_NegStrand.R
- Script_PLATE_03_COMPUTE_PSI_0_Compute.R
- Script_PLATE_03_COMPUTE_PSI_1_Compute_SE.R
- Script_PLATE_03_COMPUTE_PSI_2_Compute_MXE.R
- Script_PLATE_03_COMPUTE_PSI_3_Compute_A5SS.R
- Script_PLATE_03_COMPUTE_PSI_4_Compute_A3SS.R
- Script_PLATE_03_COMPUTE_PSI_5_Compute_RI.R
- Script_PLATE_03_COMPUTE_PSI_6_Compute_ALE.R
- Script_PLATE_03_COMPUTE_PSI_7_Compute_AFE.R
- Script_PLATE_04_PREPROCESS_2_SubsetSamples.R
- Script_PLATE_04_PREPROCESS_3_0_CheckAlignment.R
- Script_PLATE_04_PREPROCESS_3_1_CheckAlignment_PSI.R
- Script_PLATE_04_PREPROCESS_3_2_CheckAlignment_Gene.R
- Script_PLATE_04_PREPROCESS_3_3_CheckAlignment_PSI_Gene.R
- Script_PLATE_04_PREPROCESS_3_4_CheckAlignment_SJ.R
- Script_PLATE_04_PREPROCESS_4_TransformGeneValues.R
- Script_PLATE_05_EVENTS_EXPRESSED.R
- Script_PLATE_06_MODALITY_ANALYSIS_1_AssignModality.R
- Script_PLATE_06_MODALITY_ANALYSIS_2_0_PropModality.R
- Script_PLATE_06_MODALITY_ANALYSIS_2_1_PropModality_Doughnut.R
- Script_PLATE_06_MODALITY_ANALYSIS_2_2_PropModality_Bar.R
- Script_PLATE_07_PCA_0_RunPCA.R
- Script_PLATE_07_PCA_1_RunPCA_PSI.R
- Script_PLATE_07_PCA_2_RunPCA_Gene.R
- Script_PLATE_08_DE_1_0_CompareValues.R
- Script_PLATE_08_DE_1_2_CompareValues_PSI.R
- Script_PLATE_08_DE_1_3_CompareValues_Gene.R
- Script_PLATE_08_DE_1_4_CompareValues_SplicedGene.R
- Script_PLATE_08_DE_1_5_SubsetCrypticA3SS.R
- Script_PLATE_08_DE_2_0_PlotDEValues.R
- Script_PLATE_08_DE_2_1_PlotDEValues_PSI_Distance.R
- Script_PLATE_08_DE_2_2_PlotDEValues_PSI_Mean.R
- Script_PLATE_08_DE_2_3_PlotDEValues_PSI_Mean_Group1vs2.R
- Script_PLATE_08_DE_2_4_PlotDEValues_Gene_Mean_Global.R
- Script_PLATE_08_DE_2_5_PlotDEValues_Gene_Mean_Spliced.R
- Script_PLATE_08_DE_3_PctASE.R
- Script_PLATE_08_DE_4_ModalityChange.R
- Script_PLATE_08_DE_5_1_IsoSwitch.R
- Script_PLATE_08_DE_5_2_IsoSwitch_PlotExpr.R
- Script_PLATE_08_DE_6_1_GO.R
- Script_PLATE_08_DE_6_2_GO_Plot.R
- Script_PLATE_09_PREDICT_NMD_1_ParseGTF.R
- Script_PLATE_09_PREDICT_NMD_2_0_FindPTC.R
- Script_PLATE_09_PREDICT_NMD_2_1_FindPTC_SE_PosStrand.R
- Script_PLATE_09_PREDICT_NMD_2_2_FindPTC_SE_NegStrand.R
- Script_PLATE_09_PREDICT_NMD_3_1_FindPTC_RI_PosStrand.R
- Script_PLATE_09_PREDICT_NMD_3_2_FindPTC_RI_NegStrand.R
- Script_PLATE_09_PREDICT_NMD_4_1_FindPTC_A5SS_PosStrand.R
- Script_PLATE_09_PREDICT_NMD_4_2_FindPTC_A5SS_NegStrand.R
- Script_PLATE_09_PREDICT_NMD_5_1_FindPTC_A3SS_PosStrand.R
- Script_PLATE_09_PREDICT_NMD_5_2_FindPTC_A3SS_NegStrand.R
- Script_PLATE_09_PREDICT_NMD_6_PropPTC.R
- Script_PLATE_09_PREDICT_NMD_7_CompareExpr.R
- Script_PLATE_09_PREDICT_NMD_8_AnnoVolcanoPlot.R
- Script_PLATE_10_ADHOC_PLOT_0_PlotValues.R
- Script_PLATE_10_ADHOC_PLOT_1_PlotValues_PSI.R
- Script_PLATE_10_ADHOC_PLOT_2_PlotValues_Gene.R
Selected R package: MARVEL
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