R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- add_alpha()
- all_functions()
- all_names()
- ambiguous_patterns()
- ambiguous_synonyms()
- apply_color_scale()
- arrange_obs()
- arrange_taxa()
- as_id()
- as_phyloseq()
- branches()
- calc_diff_abund_deseq2()
- calc_group_mean()
- calc_group_median()
- calc_group_rsd()
- calc_group_stat()
- calc_n_samples()
- calc_obs_props()
- calc_prop_samples()
- calc_taxon_abund()
- can_be_num()
- can_be_used_in_taxmap()
- capitalize()
- check_class_col()
- check_element_length()
- check_for_pkg()
- check_option_groups()
- check_taxmap_data()
- classifications()
- compare_groups()
- complement()
- contains()
- convert_base()
- correct_taxon_names()
- counts_to_presence()
- count_capture_groups()
- database_list()
- data_used()
- desc_font()
- diverging_palette()
- DNAbin_to_char()
- dot-onAttach()
- do_calc_on_num_cols()
- edge_list_depth()
- ends_with()
- error_font()
- everything()
- extract_tax_data()
- ex_hierarchies()
- ex_hierarchy1()
- ex_hierarchy2()
- ex_hierarchy3()
- ex_taxmap()
- fasta_headers()
- filtering-helpers()
- filter_ambiguous_taxa()
- filter_obs()
- filter_taxa()
- get_class_from_el()
- get_data()
- get_database_name()
- get_dataset()
- get_data_frame()
- get_dots_or_list()
- get_edge_children()
- get_edge_parents()
- get_expected_data()
- get_node_children()
- get_numerics()
- get_numeric_cols()
- get_optimal_range()
- get_sort_var()
- get_taxmap_cols()
- get_taxmap_data()
- get_taxmap_other_cols()
- get_taxmap_table()
- get_taxonomy_levels()
- grapes-greater-than-grapes()
- heat_tree()
- heat_tree_matrix()
- hierarchies()
- hierarchy()
- highlight_taxon_ids()
- hmp_otus()
- hmp_samples()
- id_classifications()
- init_taxmap_data()
- internodes()
- inter_circle_gap()
- inverse()
- is_ambiguous()
- is_branch()
- is_internode()
- is_leaf()
- is_root()
- is_stem()
- label_bounds()
- layout_functions()
- leaves()
- leaves_apply()
- length_of_thing()
- limited_print()
- line_coords()
- lookup_tax_data()
- look_for_na()
- make_dada2_asv_table()
- make_dada2_tax_table()
- make_fasta_with_u_replaced()
- make_plot_legend()
- map_data()
- map_data_()
- map_unique()
- matches()
- metacoder()
- molten_dist()
- multi_sep_split()
- mutate_obs()
- my_print()
- names_used()
- name_font()
- ncbi_sequence()
- ncbi_taxon_sample()
- num_range()
- n_leaves()
- n_leaves_1()
- n_obs()
- n_obs_1()
- n_subtaxa()
- n_subtaxa_1()
- n_supertaxa()
- n_supertaxa_1()
- obs()
- obs_apply()
- one_of()
- parse_dada2()
- parse_dataset()
- parse_edge_list()
- parse_greengenes()
- parse_heirarchies_to_taxonomy()
- parse_mothur_taxonomy()
- parse_mothur_tax_summary()
- parse_newick()
- parse_phylo()
- parse_phyloseq()
- parse_possibly_named_logical()
- parse_primersearch()
- parse_qiime_biom()
- parse_raw_heirarchies_to_taxonomy()
- parse_rdp()
- parse_seq_input()
- parse_silva_fasta()
- parse_summary_seqs()
- parse_tax_data()
- parse_ubiome()
- parse_unite_general()
- polygon_coords()
- prefixed_print()
- primersearch()
- primersearch_is_installed()
- primersearch_raw()
- print_item()
- print_tree()
- print__character()
- print__data.frame()
- print__default_()
- print__factor()
- print__integer()
- print__list()
- print__logical()
- print__matrix()
- print__numeric()
- print__ordered()
- print__tbl_df()
- print__vector()
- progress_lapply()
- punc_font()
- qualitative_palette()
- quantative_palette()
- ranks_ref()
- rarefy_obs()
- read_fasta()
- read_lines_apply()
- remove_redundant_names()
- replace_taxon_ids()
- repo_url()
- rescale()
- reverse()
- rev_comp()
- roots()
- run_primersearch()
- sample_frac_obs()
- sample_frac_taxa()
- sample_n_obs()
- sample_n_taxa()
- scale_bar_coords()
- select_labels()
- select_obs()
- simplify()
- split_by_level()
- starts_with()
- startup_msg()
- stems()
- subtaxa()
- subtaxa_apply()
- supertaxa()
- supertaxa_apply()
- taxa-package()
- taxa()
- taxmap()
- taxon()
- taxonomy()
- taxonomy_table()
- taxon_database()
- taxon_id()
- taxon_ids()
- taxon_indexes()
- taxon_name()
- taxon_names()
- taxon_rank()
- taxon_ranks()
- text_grob_length()
- tid_font()
- to_percent()
- transform_data()
- transmute_obs()
- unique_mapping()
- validate_regex_key_pair()
- validate_regex_match()
- validate_taxmap_funcs()
- verify_color_range()
- verify_label_count()
- verify_size()
- verify_size_range()
- verify_taxmap()
- verify_trans()
- write_greengenes()
- write_mothur_taxonomy()
- write_rdp()
- write_silva_fasta()
- write_unite_general()
- zero_low_counts()
R Codes
- as_phyloseq.R
- calculations--differential_abundance.R
- calculations--internal.R
- calculations.R
- dataset_documentation.R
- heat_tree--internal.R
- heat_tree--layouts.R
- heat_tree--legend.R
- heat_tree--mapping.R
- heat_tree--resizing_text.R
- heat_tree--shape_generators.R
- heat_tree--vertex_size.R
- heat_tree.R
- heat_tree_matrix.R
- imports.R
- internal.R
- metacoder-package.R
- mothur.R
- old_taxa--dataset_documentation.R
- old_taxa--globals.R
- old_taxa--hierarchies.R
- old_taxa--hierarchy.R
- old_taxa--imports.R
- old_taxa--internal.R
- old_taxa--lazyhelpers.R
- old_taxa--package.R
- old_taxa--taxa.R
- old_taxa--taxmap--class.R
- old_taxa--taxmap--docs.R
- old_taxa--taxmap--internal.R
- old_taxa--taxmap--option_parsers.R
- old_taxa--taxmap--parsers.R
- old_taxa--taxmap--printers.R
- old_taxa--taxmap--s3.R
- old_taxa--taxon.R
- old_taxa--taxonomy--class.R
- old_taxa--taxonomy--docs.R
- old_taxa--taxonomy--internal.R
- old_taxa--taxonomy--s3.R
- old_taxa--taxon_database.R
- old_taxa--taxon_id.R
- old_taxa--taxon_name.R
- old_taxa--taxon_rank.R
- old_taxa--temp.R
- old_taxa--zzz.R
- option_parsers.R
- parsers.R
- primersearch.R
- RcppExports.R
- read_fasta.R
- remove_ambiguous.R
- sequence_download.R
- startup.R
- tools.R
- writers.R
Selected R package: metacoder
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