R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- birds_and_cats()
- build_grove_list()
- build_grove_matrix()
- check_conflicting_calibrations()
- check_ott_input()
- choose_cluster()
- classification_paths_from_taxonomy()
- clean_ott_chronogram()
- clean_taxon_info_children()
- clean_tnrs()
- cluster_patristicmatrix()
- congruify_and_check()
- congruify_and_mrca_multiPhylo()
- congruify_and_mrca_phylo()
- contributor_cache()
- datelife_authors_tabulate()
- datelife_result_median()
- datelife_result_median_matrix()
- datelife_result_MRCA()
- datelife_result_sdm_matrix()
- datelife_result_sdm_phylo()
- datelife_result_study_index()
- datelife_result_variance_matrix()
- datelife_search()
- datelife_use()
- datelife_use_datelifequery()
- date_with_pbdb()
- dot-get_ott_lineage()
- extract_calibrations_dateliferesult()
- extract_calibrations_phylo()
- extract_ott_ids()
- felid_gdr_phylo_all()
- felid_sdm()
- filter_for_grove()
- force_ultrametric()
- get_all_calibrations()
- get_all_descendant_species()
- get_best_grove()
- get_biggest_multiphylo()
- get_bold_data()
- get_calibrations_datelifequery()
- get_calibrations_vector()
- get_dated_otol_induced_subtree()
- get_datelife_result()
- get_datelife_result_datelifequery()
- get_fossil_range()
- get_goodmatrices()
- get_mrbayes_node_constraints()
- get_opentree_chronograms()
- get_opentree_species()
- get_otol_synthetic_tree()
- get_ott_children()
- get_ott_clade()
- get_ott_lineage()
- get_subset_array_dispatch()
- get_taxon_summary()
- get_tnrs_names()
- get_valid_children()
- input_process()
- is_datelife_query()
- is_datelife_result_empty()
- is_good_chronogram()
- is_n_overlap()
- make_all_associations()
- make_bladj_tree()
- make_bold_otol_tree()
- make_contributor_cache()
- make_datelife_query()
- make_datelife_query2()
- make_mrbayes_runfile()
- make_mrbayes_tree()
- make_otol_associations()
- make_overlap_table()
- make_sdm()
- make_treebase_associations()
- make_treebase_cache()
- map_nodes_ott()
- match_all_calibrations()
- matrices_to_table()
- matrix_to_table()
- message_multiphylo()
- missing_taxa_check()
- mrca_calibrations()
- opentree_chronograms()
- patristic_matrix_array_congruify()
- patristic_matrix_array_phylo_congruify()
- patristic_matrix_array_split()
- patristic_matrix_array_subset()
- patristic_matrix_array_subset_both()
- patristic_matrix_list_to_array()
- patristic_matrix_MRCA()
- patristic_matrix_name_order_test()
- patristic_matrix_name_reorder()
- patristic_matrix_pad()
- patristic_matrix_taxa_all_matching()
- patristic_matrix_to_newick()
- patristic_matrix_to_phylo()
- patristic_matrix_unpad()
- phylo_check()
- phylo_congruify()
- phylo_generate_uncertainty()
- phylo_get_node_numbers()
- phylo_get_subset_array()
- phylo_get_subset_array_congruify()
- phylo_has_brlen()
- phylo_prune_missing_taxa()
- phylo_subset_both()
- phylo_tiplabel_space_to_underscore()
- phylo_tiplabel_underscore_to_space()
- phylo_to_patristic_matrix()
- pick_grove()
- plant_bold_otol_tree()
- problems()
- recover_mrcaott()
- relevant_curators_tabulate()
- results_list_process()
- run()
- run_mrbayes()
- sample_trees()
- some_ants_datelife_result()
- subset2_search()
- subset2_taxa()
- summarize_congruifiedCalibrations()
- summarize_datelife_result()
- summarize_fossil_range()
- summarize_summary_matrix()
- summary.datelifeResult()
- summary.matchedCalibrations()
- summary_matrix_to_phylo()
- summary_matrix_to_phylo_all()
- summary_patristic_matrix_array()
- threebirds_dr()
- tnrs_match()
- treebase_cache()
- tree_add_dates()
- tree_add_nodelabels()
- tree_add_outgroup()
- tree_check()
- tree_fix_brlen()
- tree_from_taxonomy()
- tree_get_node_data()
- tree_get_singleton_outgroup()
- tree_node_tips()
- update_all_cached()
- update_datelife_cache()
- use_all_calibrations()
- use_calibrations()
- use_calibrations_bladj.matchedCalibrations()
- use_calibrations_bladj()
- use_calibrations_each()
- use_calibrations_pathd8()
- use_calibrations_treePL()
R Codes
- bold_data.R
- bold_tree.R
- cacheauthors.R
- calibrations_congruify.R
- calibrations_extract.R
- calibrations_get.R
- calibrations_match.R
- calibrations_mrca.R
- calibrations_use.R
- data.R
- datelife_calibrations.R
- datelife_internal.R
- datelife_median.R
- datelife_query.R
- datelife_query2.R
- datelife_query_tnrs.R
- datelife_result.R
- datelife_sdm.R
- datelife_search.R
- datelife_summary.R
- datelife_use.R
- get_species_from_ott.R
- groves.R
- lonely_functions.R
- make_bladj_tree.R
- make_mrbayes_tree.R
- matrix_to_table.R
- messages.R
- opentree_chronograms.R
- opentree_taxonomy.R
- opentree_taxonomy_general.R
- otol_tree.R
- pkg_reports_functions.R
- print.R
- result.R
- summary.R
- to_newick.R
- to_phylo.R
- to_phylo_all.R
- tree_add_dates.R
- tree_fix_brlen.R
- tree_from_taxonomy.R
- tree_processing.R
- uncertainty.R
- use_calibrations_bladj.R
- use_calibrations_bladj_matched.R
- use_calibrations_pathd8.R
- use_calibrations_treePL.R
Selected R package: datelife
Click on the specific functions, references or examples using the links on the left
This will display the example document in this panel! Call for submissions of examples for R packages. Contribute today!