R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- bed-class()
- bed-methods()
- bed_counts()
- bed_cprodVec()
- bed_MAF()
- bed_prodVec()
- bed_projectPCA()
- bed_projectSelfPCA()
- bed_randomSVD()
- bed_scaleBinom()
- bed_tcrossprodSelf()
- bigSNP-class()
- bigsnpr-package()
- coef_to_liab()
- download_1000G()
- download_beagle()
- download_plink()
- LD.wiki34()
- LDpred2()
- reexports()
- same_ref()
- SCT()
- seq_log()
- snp_ancestry_summary()
- snp_asGeneticPos()
- snp_attach()
- snp_attachExtdata()
- snp_autoSVD()
- snp_beagleImpute()
- snp_clumping()
- snp_codes()
- snp_cor()
- snp_fake()
- snp_fastImpute()
- snp_fastImputeSimple()
- snp_fst()
- snp_gc()
- snp_getSampleInfos()
- snp_lassosum2()
- snp_ldsc()
- snp_ldsplit()
- snp_ld_scores()
- snp_MAF()
- snp_manhattan()
- snp_match()
- snp_MAX3()
- snp_modifyBuild()
- snp_pcadapt()
- snp_plinkIBDQC()
- snp_plinkKINGQC()
- snp_plinkQC()
- snp_plinkRmSamples()
- snp_prodBGEN()
- snp_PRS()
- snp_qq()
- snp_readBed()
- snp_readBGEN()
- snp_readBGI()
- snp_save()
- snp_scaleBinom()
- snp_simuPheno()
- snp_split()
- snp_subset()
- snp_thr_correct()
- snp_writeBed()
- sub-bed-ANY-ANY-ANY-method()
- sub_bed()
R Codes
- apply-parallelize.R
- autoSVD.R
- bed-class.R
- bed-clumping.R
- bed-mat-acc.R
- bed-mult-vec.R
- bed-projectPCA.R
- bed-tcrossprodSelf.R
- bigSNP-class.R
- bigsnpr-package.R
- binom-scaling.R
- clumping.R
- corr.R
- external-software.R
- fake.R
- Fst.R
- get-save-infos.R
- impute.R
- lassosum2.R
- ld-scores.R
- LDpred2.R
- ldsc.R
- man-qq-gc.R
- match-alleles.R
- MAX3.R
- pcadapt.R
- prod-bgen.R
- PRS.R
- RcppExports.R
- read-bgen.R
- read-plink.R
- SCT.R
- simu-pheno.R
- split-LD.R
- subset-QC.R
- utils-assert.R
- utils.R
- write-plink.R
Selected R package: bigsnpr
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