R Packages that start with:
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Functions
- add_meas_BrS_case_Nest_Slice()
- add_meas_BrS_case_Nest_Slice_jags()
- add_meas_BrS_case_NoNest_reg_discrete_predictor_Slice_jags()
- add_meas_BrS_case_NoNest_reg_Slice_jags()
- add_meas_BrS_case_NoNest_Slice()
- add_meas_BrS_case_NoNest_Slice_jags()
- add_meas_BrS_ctrl_Nest_Slice()
- add_meas_BrS_ctrl_NoNest_reg_discrete_predictor_Slice_jags()
- add_meas_BrS_ctrl_NoNest_reg_Slice_jags()
- add_meas_BrS_ctrl_NoNest_Slice()
- add_meas_BrS_param_Nest_reg_Slice_jags()
- add_meas_BrS_param_Nest_Slice()
- add_meas_BrS_param_Nest_Slice_jags()
- add_meas_BrS_param_NoNest_reg_discrete_predictor_Slice_jags()
- add_meas_BrS_param_NoNest_reg_Slice_jags()
- add_meas_BrS_param_NoNest_Slice()
- add_meas_BrS_param_NoNest_Slice_jags()
- add_meas_BrS_subclass_Nest_Slice()
- add_meas_SS_case()
- add_meas_SS_param()
- as.matrix_or_vec()
- assign_model()
- baker()
- beta_parms_from_quantiles()
- beta_plot()
- bin2dec()
- check_dir_create()
- clean_combine_subsites()
- clean_perch_data()
- combine_data_nplcm()
- compute_logOR_single_cause()
- compute_marg_PR_nested_reg()
- compute_marg_PR_nested_reg_array()
- create_bugs_regressor_Eti()
- create_bugs_regressor_FPR()
- data_nplcm_noreg()
- data_nplcm_reg_nest()
- delete_start_with()
- dm_Rdate_Eti()
- dm_Rdate_FPR()
- expit()
- extract_data_raw()
- get_coverage()
- get_direct_bias()
- get_fitted_mean_nested()
- get_fitted_mean_no_nested()
- get_individual_data()
- get_individual_prediction()
- get_latent_seq()
- get_marginal_rates_nested()
- get_marginal_rates_no_nested()
- get_metric()
- get_pEti_samp()
- get_plot_num()
- get_plot_pos()
- get_postsd()
- get_top_pattern()
- H()
- has_non_basis()
- I2symb()
- Imat2cat()
- init_latent_jags_multipleSS()
- insert_bugfile_chunk_noreg_etiology()
- insert_bugfile_chunk_noreg_meas()
- insert_bugfile_chunk_reg_discrete_predictor_etiology()
- insert_bugfile_chunk_reg_discrete_predictor_nonest_meas()
- insert_bugfile_chunk_reg_etiology()
- insert_bugfile_chunk_reg_nest_meas()
- insert_bugfile_chunk_reg_nonest_meas()
- is.error()
- is_discrete()
- is_intercept_only()
- is_jags_folder()
- is_length_all_one()
- jags2_baker()
- line2user()
- loadOneName()
- logit()
- logOR()
- logsumexp()
- lookup_quality()
- make_filename()
- make_foldername()
- make_list()
- make_meas_object()
- make_numbered_list()
- make_template()
- marg_H()
- match_cause()
- merge_lists()
- my_reorder()
- NA2dot()
- nplcm()
- nplcm_fit_NoReg()
- nplcm_fit_Reg_discrete_predictor_NoNest()
- nplcm_fit_Reg_Nest()
- nplcm_fit_Reg_NoNest()
- nplcm_read_folder()
- null_as_zero()
- order_post_eti()
- overall_uniform()
- parse_nplcm_reg()
- pathogen_category_perch()
- pathogen_category_simulation()
- plot.nplcm()
- plot_BrS_panel()
- plot_case_study()
- plot_check_common_pattern()
- plot_check_pairwise_SLORD()
- plot_etiology_regression()
- plot_etiology_strat()
- plot_leftmost()
- plot_logORmat()
- plot_panels()
- plot_pie_panel()
- plot_SS_panel()
- plot_subwt_regression()
- print.nplcm()
- print.summary.nplcm.no_reg()
- print.summary.nplcm.reg_nest()
- print.summary.nplcm.reg_nest_strat()
- print.summary.nplcm.reg_nonest()
- print.summary.nplcm.reg_nonest_strat()
- read_meas_object()
- rvbern()
- set_prior_tpr_BrS_NoNest()
- set_prior_tpr_SS()
- set_strat()
- show_dep()
- show_individual()
- simulate_brs()
- simulate_latent()
- simulate_nplcm()
- simulate_ss()
- softmax()
- subset_data_nplcm_by_index()
- summarize_BrS()
- summarize_SS()
- summary.nplcm()
- symb2I()
- sym_diff_month()
- s_date_Eti()
- s_date_FPR()
- tsb()
- unfactor()
- unique_cause()
- unique_month()
- visualize_case_control_matrix()
- visualize_season()
- write.model()
- write_model_NoReg()
- write_model_Reg_discrete_predictor_NoNest()
- write_model_Reg_Nest()
- write_model_Reg_NoNest()
R Codes
Selected R package: baker
Click on the specific functions, references or examples using the links on the left
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