R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- alpha_parameter_to_xml()
- are_clock_models()
- are_equal_mcmcs()
- are_equal_screenlogs()
- are_equal_tracelogs()
- are_equal_treelogs()
- are_equal_xml_files()
- are_equal_xml_lines()
- are_equivalent_xml_files()
- are_equivalent_xml_lines()
- are_equivalent_xml_lines_all()
- are_equivalent_xml_lines_loggers()
- are_equivalent_xml_lines_operators()
- are_equivalent_xml_lines_section()
- are_fasta_filenames()
- are_ids()
- are_init_clock_models()
- are_init_mrca_priors()
- are_init_site_models()
- are_init_tree_priors()
- are_mrca_align_ids_in_fasta()
- are_mrca_priors()
- are_mrca_taxon_names_in_fasta()
- are_rln_clock_models()
- are_site_models()
- are_tree_priors()
- bd_tree_prior_to_xml_prior_distr()
- beautier-package()
- beautier()
- beta_parameter_to_xml()
- b_pop_sizes_parameter_to_xml()
- b_pop_sizes_param_to_xml()
- cbs_tree_prior_to_xml_prior_distr()
- ccp_tree_prior_to_xml_prior_distr()
- ccp_tree_prior_to_xml_state()
- cep_tree_prior_to_xml_prior_distr()
- check_alignment_id()
- check_beauti_options()
- check_clock_model()
- check_clock_models()
- check_empty_beautier_folder()
- check_filename()
- check_file_and_model_agree()
- check_file_exists()
- check_gamma_site_model()
- check_gamma_site_model_names()
- check_gtr_site_model()
- check_gtr_site_model_names()
- check_inference_model()
- check_inference_models()
- check_is_monophyletic()
- check_log_mode()
- check_log_sort()
- check_mcmc()
- check_mcmc_list_element_names()
- check_mcmc_values()
- check_mrca_prior()
- check_mrca_prior_name()
- check_mrca_prior_names()
- check_mrca_prior_taxa_names()
- check_ns_mcmc()
- check_param()
- check_param_names()
- check_param_types()
- check_phylogeny()
- check_rename_fun()
- check_rln_clock_model()
- check_screenlog()
- check_screenlog_names()
- check_screenlog_values()
- check_site_model()
- check_site_models()
- check_site_model_names()
- check_site_model_types()
- check_store_every()
- check_strict_clock_model()
- check_tn93_site_model()
- check_tn93_site_model_names()
- check_tracelog()
- check_tracelog_names()
- check_tracelog_values()
- check_treelog()
- check_treelog_names()
- check_treelog_values()
- check_tree_prior()
- check_tree_priors()
- clock_model_to_xml_operators()
- clock_model_to_xml_prior_distr()
- clock_model_to_xml_state()
- clock_model_to_xml_tracelog()
- clock_model_to_xml_treelogger()
- clock_rate_param_to_xml()
- compare_lines()
- count_trailing_spaces()
- create_alpha_param()
- create_bd_tree_prior()
- create_beast2_beast_xml()
- create_beast2_input()
- create_beast2_input_beast()
- create_beast2_input_data()
- create_beast2_input_data_sequences()
- create_beast2_input_distr()
- create_beast2_input_distr_lh()
- create_beast2_input_distr_prior()
- create_beast2_input_file()
- create_beast2_input_file_from_model()
- create_beast2_input_from_model()
- create_beast2_input_init()
- create_beast2_input_map()
- create_beast2_input_operators()
- create_beast2_input_run()
- create_beast2_input_state()
- create_beautier_tempfolder()
- create_beauti_options()
- create_beauti_options_v2_4()
- create_beauti_options_v2_6()
- create_beta_distr()
- create_beta_param()
- create_branch_rate_model_rln_xml()
- create_branch_rate_model_sc_xml()
- create_branch_rate_model_stuff_xml()
- create_branch_rate_model_xml()
- create_b_pop_sizes_param()
- create_cbs_tree_prior()
- create_ccp_tree_prior()
- create_cep_tree_prior()
- create_clock_model()
- create_clock_models()
- create_clock_models_from_names()
- create_clock_model_from_name()
- create_clock_rate_param()
- create_clock_rate_state_node_parameter_xml()
- create_data_xml()
- create_distr()
- create_exp_distr()
- create_freq_param()
- create_gamma_distr()
- create_gamma_site_model()
- create_gtr_site_model()
- create_gtr_subst_model_xml()
- create_hky_site_model()
- create_hky_subst_model_xml()
- create_inference_model()
- create_inv_gamma_distr()
- create_jc69_site_model()
- create_jc69_subst_model_xml()
- create_kappa_1_param()
- create_kappa_2_param()
- create_kappa_param()
- create_lambda_param()
- create_laplace_distr()
- create_loggers_xml()
- create_log_normal_distr()
- create_mcmc()
- create_mean_param()
- create_mrca_prior()
- create_mu_param()
- create_m_param()
- create_normal_distr()
- create_ns_inference_model()
- create_ns_mcmc()
- create_one_div_x_distr()
- create_param()
- create_poisson_distr()
- create_rate_ac_param()
- create_rate_ag_param()
- create_rate_at_param()
- create_rate_categories_state_node_xml()
- create_rate_cg_param()
- create_rate_ct_param()
- create_rate_gt_param()
- create_rln_clock_branch_rate_model_xml()
- create_rln_clock_model()
- create_scale_param()
- create_screenlog()
- create_screenlog_xml()
- create_sigma_param()
- create_site_model()
- create_site_models()
- create_site_models_from_names()
- create_site_model_from_name()
- create_site_model_parameters_xml()
- create_site_model_xml()
- create_strict_clock_branch_rate_model_xml()
- create_strict_clock_model()
- create_strict_clock_rate_scaler_operator_xml()
- create_subst_model_xml()
- create_s_param()
- create_temp_screenlog_filename()
- create_temp_tracelog_filename()
- create_temp_treelog_filename()
- create_test_inference_model()
- create_test_mcmc()
- create_test_ns_inference_model()
- create_test_ns_mcmc()
- create_test_screenlog()
- create_test_tracelog()
- create_test_treelog()
- create_tn93_site_model()
- create_tn93_subst_model_xml()
- create_tracelog()
- create_tracelog_xml()
- create_trait_set_string()
- create_treelog()
- create_treelog_xml()
- create_tree_likelihood_distr_xml()
- create_tree_prior()
- create_tree_priors()
- create_ucld_mean_state_node_param_xml()
- create_ucld_stdev_state_node_param_xml()
- create_uniform_distr()
- create_xml_declaration()
- create_yule_tree_prior()
- default_parameters_doc()
- default_params_doc()
- distr_to_xml()
- distr_to_xml_beta()
- distr_to_xml_exp()
- distr_to_xml_inv_gamma()
- distr_to_xml_laplace()
- distr_to_xml_log_normal()
- distr_to_xml_normal()
- distr_to_xml_one_div_x()
- distr_to_xml_poisson()
- distr_to_xml_uniform()
- extract_xml_loggers_from_lines()
- extract_xml_operators_from_lines()
- extract_xml_section_from_lines()
- fasta_file_to_sequences()
- find_clock_model()
- find_first_regex_line()
- find_first_xml_opening_tag_line()
- find_last_regex_line()
- find_last_xml_closing_tag_line()
- freq_equilibrium_to_xml()
- freq_param_to_xml()
- gamma_distr_to_xml()
- gamma_site_models_to_xml_prior_distr()
- gamma_site_model_to_xml_prior_distr()
- gamma_site_model_to_xml_state()
- get_alignment_id()
- get_alignment_ids()
- get_alignment_ids_from_fasta_filenames()
- get_beautier_folder()
- get_beautier_path()
- get_beautier_paths()
- get_beautier_tempfilename()
- get_clock_models_ids()
- get_clock_model_name()
- get_clock_model_names()
- get_crown_age()
- get_default_beast_namespace()
- get_default_beast_namespace_v2_4()
- get_default_beast_namespace_v2_6()
- get_distr_names()
- get_distr_n_params()
- get_fasta_filename()
- get_file_base_sans_ext()
- get_freq_equilibrium_names()
- get_gamma_site_model_n_distrs()
- get_gamma_site_model_n_params()
- get_has_non_strict_clock_model()
- get_inference_model_filenames()
- get_log_modes()
- get_log_sorts()
- get_mcmc_filenames()
- get_n_taxa()
- get_operator_id_pre()
- get_param_names()
- get_remove_dir_fun()
- get_remove_hex_fun()
- get_replace_dir_fun()
- get_site_models_n_distrs()
- get_site_models_n_params()
- get_site_model_names()
- get_site_model_n_distrs()
- get_site_model_n_params()
- get_taxa_names()
- get_tree_priors_n_distrs()
- get_tree_priors_n_params()
- get_tree_prior_names()
- get_tree_prior_n_distrs()
- get_tree_prior_n_params()
- get_xml_closing_tag()
- get_xml_opening_tag()
- gtr_site_model_to_xml_prior_distr()
- gtr_site_model_to_xml_state()
- has_mrca_prior()
- has_mrca_prior_with_distr()
- has_rln_clock_model()
- has_strict_clock_model()
- has_tip_dating()
- has_xml_closing_tag()
- has_xml_opening_tag()
- has_xml_short_closing_tag()
- hky_site_model_to_xml_prior_distr()
- hky_site_model_to_xml_state()
- indent()
- init_bd_tree_prior()
- init_beta_distr()
- init_ccp_tree_prior()
- init_cep_tree_prior()
- init_clock_models()
- init_distr()
- init_exp_distr()
- init_gamma_distr()
- init_gamma_site_model()
- init_gtr_site_model()
- init_hky_site_model()
- init_inference_model()
- init_inv_gamma_distr()
- init_jc69_site_model()
- init_laplace_distr()
- init_log_normal_distr()
- init_mrca_prior()
- init_mrca_priors()
- init_normal_distr()
- init_one_div_x_distr()
- init_param()
- init_poisson_distr()
- init_rln_clock_model()
- init_site_models()
- init_strict_clock_model()
- init_tn93_site_model()
- init_tree_priors()
- init_uniform_distr()
- init_yule_tree_prior()
- interspace()
- is_alpha_param()
- is_bd_tree_prior()
- is_beauti_options()
- is_beta_distr()
- is_beta_param()
- is_b_pop_sizes_param()
- is_cbs_tree_prior()
- is_ccp_tree_prior()
- is_cep_tree_prior()
- is_clock_model()
- is_clock_model_name()
- is_clock_rate_param()
- is_default_mcmc()
- is_distr()
- is_distr_name()
- is_exp_distr()
- is_freq_equilibrium_name()
- is_freq_param()
- is_gamma_distr()
- is_gamma_site_model()
- is_gtr_site_model()
- is_hky_site_model()
- is_id()
- is_inference_model()
- is_init_bd_tree_prior()
- is_init_beta_distr()
- is_init_cbs_tree_prior()
- is_init_ccp_tree_prior()
- is_init_cep_tree_prior()
- is_init_clock_model()
- is_init_distr()
- is_init_exp_distr()
- is_init_gamma_distr()
- is_init_gamma_site_model()
- is_init_gtr_site_model()
- is_init_hky_site_model()
- is_init_inv_gamma_distr()
- is_init_jc69_site_model()
- is_init_laplace_distr()
- is_init_log_normal_distr()
- is_init_mrca_prior()
- is_init_normal_distr()
- is_init_one_div_x_distr()
- is_init_param()
- is_init_poisson_distr()
- is_init_rln_clock_model()
- is_init_site_model()
- is_init_strict_clock_model()
- is_init_tn93_site_model()
- is_init_tree_prior()
- is_init_uniform_distr()
- is_init_yule_tree_prior()
- is_inv_gamma_distr()
- is_in_patterns()
- is_jc69_site_model()
- is_kappa_1_param()
- is_kappa_2_param()
- is_kappa_param()
- is_lambda_param()
- is_laplace_distr()
- is_log_normal_distr()
- is_mcmc()
- is_mcmc_nested_sampling()
- is_mean_param()
- is_mrca_align_ids_in_fastas()
- is_mrca_align_id_in_fasta()
- is_mrca_prior()
- is_mrca_prior_with_distr()
- is_mu_param()
- is_m_param()
- is_normal_distr()
- is_one_bool()
- is_one_div_x_distr()
- is_one_double()
- is_one_empty_string()
- is_one_int()
- is_one_na()
- is_one_string()
- is_one_string_that_is_a_number()
- is_on_appveyor()
- is_on_ci()
- is_on_github_actions()
- is_on_travis()
- is_param()
- is_param_name()
- is_phylo()
- is_poisson_distr()
- is_rate_ac_param()
- is_rate_ag_param()
- is_rate_at_param()
- is_rate_cg_param()
- is_rate_ct_param()
- is_rate_gt_param()
- is_rln_clock_model()
- is_scale_param()
- is_sigma_param()
- is_site_model()
- is_site_model_name()
- is_strict_clock_model()
- is_s_param()
- is_tn93_site_model()
- is_tree_prior()
- is_tree_prior_name()
- is_uniform_distr()
- is_xml()
- is_yule_tree_prior()
- jc69_site_model_to_xml_state()
- kappa_param_to_xml()
- mcmc_to_xml_run()
- mcmc_to_xml_run_default()
- mcmc_to_xml_run_nested_sampling()
- mrca_priors_to_xml_prior_distr()
- mrca_prior_to_xml_prior_distr()
- mrca_prior_to_xml_state()
- mrca_prior_to_xml_taxonset()
- mrca_prior_to_xml_tracelog()
- m_param_to_xml()
- no_taxa_to_xml_tree()
- parameter_to_xml()
- parameter_to_xml_kappa_1()
- parameter_to_xml_kappa_2()
- parameter_to_xml_lambda()
- parameter_to_xml_mean()
- parameter_to_xml_mu()
- parameter_to_xml_rate_ac()
- parameter_to_xml_rate_ag()
- parameter_to_xml_rate_at()
- parameter_to_xml_rate_cg()
- parameter_to_xml_rate_ct()
- parameter_to_xml_rate_gt()
- parameter_to_xml_s()
- parameter_to_xml_scale()
- parameter_to_xml_sigma()
- remove_beautier_folder()
- remove_empty_lines()
- remove_multiline()
- rename_inference_model_filenames()
- rename_mcmc_filenames()
- rln_clock_model_to_xml_mean_rate_prior()
- rln_clock_model_to_xml_operators()
- rln_clock_model_to_xml_prior_distr()
- rln_clock_model_to_xml_state()
- rln_clock_model_to_xml_tracelog()
- rnd_phylo_to_xml_init()
- site_models_to_xml_operators()
- site_models_to_xml_prior_distr()
- site_models_to_xml_tracelog()
- site_model_to_xml_operators()
- site_model_to_xml_prior_distr()
- site_model_to_xml_state()
- site_model_to_xml_tracelog()
- strict_clock_model_to_xml_operators()
- strict_clock_model_to_xml_prior_distr()
- strict_clock_model_to_xml_state()
- strict_clock_model_to_xml_tracelog()
- s_parameter_to_xml()
- taxa_to_xml_tree()
- tipdate_taxa_to_xml_trait()
- tipdate_taxa_to_xml_tree()
- tn93_site_model_to_xml_prior_distr()
- tn93_site_model_to_xml_state()
- tree_model_to_tracelog_xml()
- tree_priors_to_xml_prior_distr()
- tree_priors_to_xml_tracelog()
- tree_prior_to_xml_operators()
- tree_prior_to_xml_prior_distr()
- tree_prior_to_xml_state()
- tree_prior_to_xml_tracelog()
- unindent()
- yule_tree_prior_to_xml_operators()
- yule_tree_prior_to_xml_prior_distr()
R Codes
- alpha_parameter_to_xml.R
- are_clock_models.R
- are_equal_mcmcs.R
- are_equal_screenlogs.R
- are_equal_tracelogs.R
- are_equal_treelogs.R
- are_equal_xml_files.R
- are_equal_xml_lines.R
- are_equivalent_xmls.R
- are_fasta_filenames.R
- are_ids.R
- are_init_clock_models.R
- are_init_mrca_priors.R
- are_init_site_models.R
- are_init_tree_priors.R
- are_mrca_align_ids_in_fasta.R
- are_mrca_priors.R
- are_mrca_taxon_names_in_fasta.R
- are_site_models.R
- are_tree_priors.R
- beautier-package.R
- beautier.R
- beta_parameter_to_xml.R
- b_pop_sizes_parameter_to_xml.R
- b_pop_sizes_param_to_xml.R
- ccp_tree_prior_to_xml_state.R
- check_alignment_id.R
- check_beauti_options.R
- check_clock_model.R
- check_clock_models.R
- check_empty_beautier_folder.R
- check_filename.R
- check_file_and_model_agree.R
- check_file_exists.R
- check_gamma_site_model.R
- check_gtr_site_model.R
- check_inference_model.R
- check_inference_models.R
- check_is_monophyletic.R
- check_log_mode.R
- check_log_sort.R
- check_mcmc.R
- check_mcmc_nested_sampling.R
- check_mrca_prior.R
- check_mrca_prior_name.R
- check_mrca_prior_taxa_names.R
- check_param.R
- check_phylogeny.R
- check_rename_fun.R
- check_screenlog.R
- check_site_model.R
- check_site_models.R
- check_store_every.R
- check_tn93_site_model.R
- check_tracelog.R
- check_treelog.R
- check_tree_prior.R
- check_tree_priors.R
- check_true_false.R
- clock_model_to_xml_operators.R
- clock_model_to_xml_prior_distr.R
- clock_model_to_xml_state.R
- clock_model_to_xml_tracelog.R
- clock_model_to_xml_treelogger.R
- clock_rate_param_to_xml.R
- compare_lines.R
- count_trailing_spaces.R
- create_beast2_beast_xml.R
- create_beast2_input.R
- create_beast2_input_beast.R
- create_beast2_input_data.R
- create_beast2_input_data_sequences.R
- create_beast2_input_distr.R
- create_beast2_input_file.R
- create_beast2_input_file_from_model.R
- create_beast2_input_from_model.R
- create_beast2_input_init.R
- create_beast2_input_map.R
- create_beast2_input_operators.R
- create_beast2_input_run.R
- create_beast2_input_state.R
- create_beast2_input_xml.R
- create_beautier_tempfolder.R
- create_beauti_options.R
- create_beauti_options_v2_4.R
- create_beauti_options_v2_6.R
- create_branch_rate_model_rln_xml.R
- create_branch_rate_model_stuff_xml.R
- create_branch_rate_model_xml.R
- create_clock_model.R
- create_clock_models.R
- create_clock_models_from_names.R
- create_clock_model_from_name.R
- create_clock_rate_state_node_parameter_xml.R
- create_data_xml.R
- create_distr.R
- create_gamma_site_model.R
- create_inference_model.R
- create_loggers_xml.R
- create_mcmc.R
- create_mcmc_nested_sampling.R
- create_mrca_prior.R
- create_ns_inference_model.R
- create_param.R
- create_rate_categories_state_node_xml.R
- create_rln_clock_branch_rate_model_xml.R
- create_screenlog.R
- create_screenlog_xml.R
- create_site_model.R
- create_site_models.R
- create_site_models_from_names.R
- create_site_model_from_name.R
- create_site_model_parameters_xml.R
- create_site_model_xml.R
- create_strict_clock_branch_rate_model_xml.R
- create_strict_clock_rate_scaler_operator_xml.R
- create_subst_model_xml.R
- create_temp_screenlog_filename.R
- create_temp_tracelog_filename.R
- create_temp_treelog_filename.R
- create_test_inference_model.R
- create_test_mcmc.R
- create_test_ns_inference_model.R
- create_test_ns_mcmc.R
- create_test_screenlog.R
- create_test_tracelog.R
- create_test_treelog.R
- create_tracelog.R
- create_tracelog_xml.R
- create_trait_set_string.R
- create_treelog.R
- create_treelog_xml.R
- create_tree_likelihood_distr_xml.R
- create_tree_prior.R
- create_tree_priors.R
- create_ucld_mean_state_node_param_xml.R
- create_ucld_stdev_state_node_param_xml.R
- default_params_doc.R
- distr_to_xml.R
- extract_xml_loggers_from_lines.R
- extract_xml_operators_from_lines.R
- extract_xml_section_from_lines.R
- fasta_to_sequences.R
- find_clock_model.R
- find_first_regex_line.R
- find_first_xml_opening_tag_line.R
- find_last_regex_line.R
- find_last_xml_closing_tag_line.R
- freq_equilibrium_to_xml.R
- freq_param_to_xml.R
- gamma_distr_to_xml.R
- gamma_site_models_to_xml_prior_distr.R
- gamma_site_model_to_xml_prior_distr.R
- gamma_site_model_to_xml_state.R
- get_alignment_id.R
- get_alignment_ids.R
- get_beautier_folder.R
- get_beautier_path.R
- get_beautier_paths.R
- get_beautier_tempfilename.R
- get_clock_models_ids.R
- get_clock_model_name.R
- get_clock_model_names.R
- get_crown_age.R
- get_default_beast_namespace.R
- get_distr_names.R
- get_distr_n_params.R
- get_file_base_sans_ext.R
- get_freq_equilibrium_names.R
- get_gamma_site_model_n_distrs.R
- get_gamma_site_model_n_params.R
- get_has_non_strict_clock_model.R
- get_inference_model_filenames.R
- get_log_modes.R
- get_log_sorts.R
- get_mcmc_filenames.R
- get_n_taxa.R
- get_operator_id_pre.R
- get_param_names.R
- get_remove_dir_fun.R
- get_remove_hex_fun.R
- get_replace_dir_fun.R
- get_site_models_n_distrs.R
- get_site_models_n_params.R
- get_site_model_names.R
- get_site_model_n_distrs.R
- get_site_model_n_params.R
- get_taxa_names.R
- get_test_filenames.R
- get_tree_priors_n_distrs.R
- get_tree_priors_n_params.R
- get_tree_prior_names.R
- get_tree_prior_n_distrs.R
- get_tree_prior_n_params.R
- get_xml_closing_tag.R
- get_xml_opening_tag.R
- gtr_site_model_to_xml_prior.R
- gtr_site_model_to_xml_state.R
- has_mrca_prior.R
- has_mrca_prior_with_distr.R
- has_rln_clock_model.R
- has_strict_clock_model.R
- has_tip_dating.R
- has_xml_closing_tag.R
- has_xml_opening_tag.R
- has_xml_short_closing_tag.R
- hky_site_model_to_xml_prior_distr.R
- hky_site_model_to_xml_state.R
- import-standalone-obj-type.R
- import-standalone-types-check.R
- indent.R
- init_clock_models.R
- init_distr.R
- init_gamma_site_model.R
- init_inference_model.R
- init_mrca_prior.R
- init_mrca_priors.R
- init_param.R
- init_site_models.R
- init_tree_priors.R
- interspace.R
- is_beauti_options.R
- is_clock_model.R
- is_clock_model_name.R
- is_default_mcmc.R
- is_distr.R
- is_distr_name.R
- is_freq_equilibrium_name.R
- is_gamma_site_model.R
- is_id.R
- is_inference_model.R
- is_init_clock_model.R
- is_init_distr.R
- is_init_gamma_site_model.R
- is_init_mrca_prior.R
- is_init_param.R
- is_init_site_model.R
- is_init_tree_prior.R
- is_in_patterns.R
- is_mcmc.R
- is_mrca_align_ids_in_fastas.R
- is_mrca_align_id_in_fasta.R
- is_mrca_prior.R
- is_mrca_prior_with_distr.R
- is_m_param.R
- is_one_bool.R
- is_one_double.R
- is_one_empty_string.R
- is_one_int.R
- is_one_na.R
- is_one_string.R
- is_one_string_that_is_a_number.R
- is_on_ci.R
- is_param.R
- is_param_name.R
- is_phylo.R
- is_site_model.R
- is_site_model_name.R
- is_tree_prior.R
- is_tree_prior_name.R
- is_xml.R
- jc69_site_model_to_xml_state.R
- kappa_param_to_xml.R
- mcmc_to_xml_run.R
- mrca_priors_to_xml_distr.R
- mrca_prior_to_xml_prior_distr.R
- mrca_prior_to_xml_state.R
- mrca_prior_to_xml_taxonset.R
- mrca_prior_to_xml_tracelog.R
- m_param_to_xml.R
- parameter_to_xml.R
- remove_beautier_folder.R
- remove_empty_lines.R
- remove_multiline.R
- rename_inference_model_filenames.R
- rename_mcmc_filenames.R
- rln_clock_model_to_xml_mean_rate_prior.R
- rln_clock_model_to_xml_operators.R
- rln_clock_model_to_xml_prior_distr.R
- rln_clock_model_to_xml_state.R
- rln_clock_model_to_xml_tracelog.R
- rnd_phylo_xml_init.R
- site_models_to_xml_operators.R
- site_models_to_xml_prior_distr.R
- site_models_to_xml_tracelog.R
- site_model_to_xml_operators.R
- site_model_to_xml_prior.R
- site_model_to_xml_state.R
- site_model_to_xml_tracelog.R
- strict_clock_model_to_xml_operators.R
- strict_clock_model_to_xml_prior_distr.R
- strict_clock_model_to_xml_state.R
- strict_clock_model_to_xml_tracelog.R
- s_parameter_to_xml.R
- taxa_to_xml_tree.R
- tipdate_taxa_to_xml_trait.R
- tn93_site_model_to_xml_prior_distr.R
- tn93_site_model_to_xml_state.R
- tree_model_to_tracelog_xml.R
- tree_priors_to_xml_distr.R
- tree_priors_to_xml_tracelog.R
- tree_prior_to_xml_operators.R
- tree_prior_to_xml_prior_distr.R
- tree_prior_to_xml_state.R
- tree_prior_to_xml_tracelog.R
- unindent.R
- yule_tree_prior_to_xml_operators.R
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