R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- add_quotes_if_has_spaces()
- are_beast2_input_lines()
- are_beast2_input_lines_deep()
- are_beast2_input_lines_fast()
- are_identical_alignments()
- beast2_options_to_table()
- beastier-package()
- beastier()
- beastier_report()
- check_beast2()
- check_beast2_options()
- check_beast2_optionses()
- check_beast2_options_data_types()
- check_beast2_options_do_not_overwrite_existing_files()
- check_beast2_options_filenames_differ()
- check_beast2_options_names()
- check_beast2_path()
- check_can_create_dir_for_state_output_file()
- check_can_create_file()
- check_can_create_screenlog_file()
- check_can_create_state_output_file()
- check_can_create_tracelog_file()
- check_can_create_treelog_file()
- check_empty_beastier_folder()
- check_empty_beaustier_folders()
- check_input_filename()
- check_input_filename_validity()
- check_n_threads()
- check_os()
- check_rng_seed()
- continue_beast2()
- create_beast2_continue_cmd_from_options()
- create_beast2_input_file_folder()
- create_beast2_options()
- create_beast2_run_cmd()
- create_beast2_run_cmd_from_options()
- create_beast2_screenlog_folder()
- create_beast2_state_output_file_folder()
- create_beast2_tracelog_folder()
- create_beast2_treelog_folder()
- create_beast2_validate_cmd()
- create_beast2_validate_cmd_bin()
- create_beast2_validate_cmd_jar()
- create_beast2_version_cmd()
- create_beast2_version_cmd_bin()
- create_beast2_version_cmd_jar()
- create_beastier_tempfolder()
- create_mcbette_beast2_options()
- create_random_alignment()
- create_random_fasta()
- create_random_phylogeny()
- create_temp_input_filename()
- create_temp_state_filename()
- default_params_doc()
- do_minimal_run()
- extract_screenlog_filename_from_beast2_input_file()
- extract_tracelog_filename_from_beast2_input_file()
- extract_treelog_filename_from_beast2_input_file()
- get_alignment_ids_from_xml_filename()
- get_beast2_example_filename()
- get_beast2_example_filenames()
- get_beast2_main_class_name()
- get_beast2_options_filenames()
- get_beast2_version()
- get_beastier_folder()
- get_beastier_path()
- get_beastier_paths()
- get_beastier_tempfilename()
- get_default_beast2_bin_path()
- get_default_beast2_download_url()
- get_default_beast2_download_url_linux()
- get_default_beast2_download_url_win()
- get_default_beast2_folder()
- get_default_beast2_jar_path()
- get_default_beast2_path()
- get_default_beast2_version()
- get_default_java_path()
- get_duplicate_param_ids()
- get_java_version()
- get_trees_filenames()
- gives_beast2_warning()
- has_unique_ids()
- install_beast2()
- is_alignment()
- is_beast2_input_file()
- is_beast2_installed()
- is_bin_path()
- is_jar_path()
- is_on_appveyor()
- is_on_ci()
- is_on_travis()
- is_win_bin_path()
- print_beast2_options()
- remove_beastier_folder()
- remove_beaustier_folders()
- remove_file_if_present()
- rename_beast2_options_filenames()
- run_beast2()
- run_beast2_from_options()
- save_lines()
- save_nexus_as_fasta()
- uninstall_beast2()
- upgrade_beast2()
R Codes
- add_quotes_if_has_spaces.R
- are_beast2_input_lines.R
- are_identical_alignments.R
- beast2_options_to_table.R
- beastier-package.R
- beastier.R
- beastier_report.R
- check_beast2.R
- check_beast2_options.R
- check_beast2_optionses.R
- check_beast2_options_do_not_overwrite_existing_files.R
- check_beast2_path.R
- check_can_create_dir_for_state_output_file.R
- check_can_create_file.R
- check_can_create_screenlog_file.R
- check_can_create_state_output_file.R
- check_can_create_tracelog_file.R
- check_can_create_treelog_file.R
- check_empty_beastier_folder.R
- check_empty_beaustier_folders.R
- check_input_filename.R
- check_n_threads.R
- check_os.R
- check_rng_seed.R
- check_true_false.R
- continue_beast2.R
- create_beast2_continue_cmd_from_options.R
- create_beast2_input_file_folder.R
- create_beast2_options.R
- create_beast2_run_cmd.R
- create_beast2_run_cmd_from_options.R
- create_beast2_screenlog_folder.R
- create_beast2_state_output_file_folder.R
- create_beast2_tracelog_folder.R
- create_beast2_treelog_folder.R
- create_beast2_validate_cmd.R
- create_beast2_version_cmd.R
- create_beastier_tempfolder.R
- create_mcbette_beast2_options.R
- create_random_alignment.R
- create_random_fasta.R
- create_random_phylogeny.R
- create_temp_input_filename.R
- create_temp_state_filename.R
- default_params_doc.R
- do_minimal_run.R
- extract_screenlog_filename_from_beast2_input_file.R
- extract_tracelog_filename_from_beast2_input_file.R
- extract_treelog_filename_from_beast2_input_file.R
- get_alignment_ids.R
- get_beast2_example_filename.R
- get_beast2_example_filenames.R
- get_beast2_main_class_name.R
- get_beast2_options_filenames.R
- get_beast2_version.R
- get_beastier_folder.R
- get_beastier_tempfilename.R
- get_default_beast2_bin_path.R
- get_default_beast2_download_url.R
- get_default_beast2_folder.R
- get_default_beast2_jar_path.R
- get_default_beast2_path.R
- get_default_beast2_version.R
- get_default_java_path.R
- get_duplicate_param_ids.R
- get_java_version.R
- get_path.R
- get_paths.R
- get_trees_filenames.R
- gives_beast2_warning.R
- has_unique_ids.R
- import-standalone-obj-type.R
- import-standalone-types-check.R
- install_beast2.R
- is_alignment.R
- is_beast2_input_file.R
- is_beast2_installed.R
- is_bin_path.R
- is_jar_path.R
- is_on_ci.R
- print_beast2_options.R
- remove_beastier_folder.R
- remove_beaustier_folders.R
- remove_file_if_present.R
- rename_beast2_options_filenames.R
- run_beast2.R
- run_beast2_from_options.R
- save_lines.R
- save_nexus_as_fasta.R
- uninstall_beast2.R
- upgrade_beast2.R
Selected R package: beastier
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