R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- AAToCodon()
- acfCSP()
- acfMCMC()
- addObservedSynthesisRateSet()
- aminoAcids()
- calculateMarginalLogLikelihood()
- calculateSCUO()
- codons()
- codonToAA()
- convergence.test()
- findOptimalCodon()
- fixDEta()
- fixDM()
- fixSphi()
- geomMean()
- getAdaptiveWidth()
- getCAI()
- getCAIweights()
- getCodonCounts()
- getCodonCountsForAA()
- getCodonSpecificPosteriorMeanForCodon()
- getCodonSpecificPosteriorVarianceForCodon()
- getCodonSpecificQuantilesForCodon()
- getCSPEstimates()
- getEstimatedMixtureAssignmentForGene()
- getEstimatedMixtureAssignmentProbabilitiesForGene()
- getExpressionEstimates()
- getGroupList()
- getLogLikelihoodTrace()
- getLogPosteriorMean()
- getLogPosteriorTrace()
- getMixtureAssignmentEstimate()
- getNames()
- getNc()
- getNcAA()
- getNoiseOffsetPosteriorMean()
- getNoiseOffsetVariance()
- getObservedSynthesisRateSet()
- getSamples()
- getSelectionCoefficients()
- getStdDevSynthesisRatePosteriorMean()
- getStdDevSynthesisRateVariance()
- getStepsToAdapt()
- getSynthesisRate()
- getSynthesisRatePosteriorMeanForGene()
- getSynthesisRatePosteriorVarianceForGene()
- getThinning()
- getTrace()
- getTraceObject()
- initializeCovarianceMatrices()
- initializeGenomeObject()
- initializeMCMCObject()
- initializeModelObject()
- initializeParameterObject()
- initializeSynthesisRateByGenome()
- initializeSynthesisRateByList()
- initializeSynthesisRateByRandom()
- initMutationCategories()
- initSelectionCategories()
- length.Rcpp_Genome()
- loadMCMCObject()
- loadParameterObject()
- plot.Rcpp_FONSEModel()
- plot.Rcpp_FONSEParameter()
- plot.Rcpp_MCMCAlgorithm()
- plot.Rcpp_ROCModel()
- plot.Rcpp_ROCParameter()
- plot.Rcpp_Trace()
- plotAcceptanceRatios()
- plotCodonSpecificParameters()
- readPhiValue()
- runMCMC()
- setAdaptiveWidth()
- setGroupList()
- setRestartFileSettings()
- setRestartSettings()
- setSamples()
- setStepsToAdapt()
- setThinning()
- simulateGenome()
- summary.Rcpp_Genome()
- writeMCMCObject()
- writeParameterObject()
R Codes
Selected R package: AnaCoDa
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