R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- bin_curve()
- bin_vector()
- calc_delta_errors()
- calc_emp_p()
- calc_m()
- calc_p()
- Cape-class()
- cape2mpp()
- center_std()
- check_bad_markers()
- check_communities()
- check_geno()
- check_underscore()
- chunkV()
- colors_from_values()
- compare_markers()
- consec_pairs()
- delete_underscore()
- direct_influence()
- draw_pie()
- error_prop()
- exp_color_fun()
- flatten_array()
- genome_wide_threshold_1D()
- get_allele_colors()
- get_block_allele()
- get_circle()
- get_color()
- get_color2()
- get_col_num()
- get_concent_circ()
- get_covar()
- get_eigentraits()
- get_geno()
- get_geno_dim()
- get_geno_with_covar()
- get_interaction_error()
- get_layout_mat()
- get_line()
- get_linearly_independent()
- get_marker_chr()
- get_marker_covar()
- get_marker_idx()
- get_marker_location()
- get_marker_name()
- get_marker_num()
- get_network()
- get_pairs_for_pairscan()
- get_pheno()
- get_stats_multiallele()
- hist_pheno()
- image_with_text()
- impute_missing_geno()
- kinship()
- kin_adjust()
- linkage_blocks_network()
- load_input_and_run_cape()
- marker2covar()
- my_image_plot()
- norm_pheno()
- one_pairscan_parallel()
- one_singlescanDO()
- pairscan()
- pairscan_kin()
- pairscan_noKin()
- pairscan_null()
- pairscan_null_kin()
- pair_matrix()
- pheatmap_generate_breaks()
- pheatmap_scale_colours()
- pheno2covar()
- plink2cape()
- plot_bars()
- plot_effects()
- plot_full_network()
- plot_int_heat()
- plot_lines()
- plot_network()
- plot_pairscan()
- plot_pheno_cor()
- plot_points()
- plot_singlescan()
- plot_svd()
- plot_trait_circ()
- plot_variant_influences()
- qnorm_pheno()
- qtl2_to_cape()
- read_parameters()
- read_population()
- remove_ind()
- remove_kin_ind()
- remove_markers()
- remove_missing_genotype_data()
- remove_unused_markers()
- report_progress()
- rotate_mat()
- run_cape()
- rz_transform()
- segment_region()
- select_eigentraits()
- select_markers_for_pairscan()
- select_pheno()
- singlescan()
- sort_by_then_by()
- write_population()
- write_variant_influences()
R Codes
- bin_curve.R
- bin_vector.R
- calc_delta_errors.R
- calc_emp_p.R
- calc_m.R
- calc_p.R
- Cape.R
- cape2mpp.R
- center_std.R
- check_bad_markers.R
- check_communities.R
- check_geno.R
- check_underscore.R
- chunkV.R
- colors_from_values.R
- compare_markers.R
- consec_pairs.R
- delete_underscore.R
- direct_influence.R
- draw_pie.R
- error_prop.R
- exp_color_fun.R
- flatten_array.R
- genome_wide_threshold_1D.R
- get_allele_colors.R
- get_block_allele.R
- get_circle.R
- get_color.R
- get_color2.R
- get_col_num.R
- get_concent_circ.R
- get_covar.R
- get_eigentraits.R
- get_geno.R
- get_geno_dim.R
- get_geno_with_covar.R
- get_interaction_error.R
- get_layout_mat.R
- get_line.R
- get_linearly_independent.R
- get_marker_chr.R
- get_marker_covar.R
- get_marker_idx.R
- get_marker_location.R
- get_marker_name.R
- get_marker_num.R
- get_network.R
- get_pairs_for_pairscan.R
- get_pheno.R
- get_stats_multiallele.R
- hist_pheno.R
- image_with_text.R
- impute_missing_geno.R
- kinship.R
- kin_adjust.R
- linkage_blocks_network.R
- load_input_and_run_cape.R
- marker2covar.R
- my_image_plot.R
- norm_pheno.R
- one_pairscan_parallel.R
- one_singlescanDO.R
- pairscan.R
- pairscan_kin.R
- pairscan_noKin.R
- pairscan_null.R
- pairscan_null_kin.R
- pair_matrix.R
- pheatmap_generate_breaks.R
- pheatmap_scale_colours.R
- pheno2covar.R
- plink2cape.R
- plot_bars.R
- plot_effects.R
- plot_full_network.R
- plot_int_heat.R
- plot_lines.R
- plot_network.R
- plot_pairscan.R
- plot_pheno_cor.R
- plot_points.R
- plot_singlescan.R
- plot_svd.R
- plot_trait_circ.R
- plot_variant_influences.R
- qnorm_pheno.R
- qtl2_to_cape.R
- read_parameters.R
- read_population.R
- remove_ind.R
- remove_kin_ind.R
- remove_markers.R
- remove_missing_genotype_data.R
- remove_unused_markers.R
- report_progress.R
- rotate_mat.R
- run_cape.R
- rz_transform.R
- segment_region.R
- select_eigentraits.R
- select_markers_for_pairscan.R
- select_pheno.R
- singlescan.R
- sort_by_then_by.R
- write_population.R
- write_variant_influences.R
Selected R package: cape
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