R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- AdditionTree()
- AllSPR()
- Carter1()
- CharacterLength()
- ClusterStrings()
- ConcordantInformation()
- congreveLamsdellMatrices()
- Consistency()
- cSPR()
- dot-CombineResults()
- dot-GapHandler()
- dot-NonDuplicateRoot()
- dot-UniqueExceptHits()
- DoubleNNI()
- GapHandler()
- inapplicable.datasets()
- is.morphyPtr()
- Jackknife()
- JackLabels()
- MaximizeParsimony()
- MinimumLength()
- MorphyErrorCheck()
- MorphyTreeLength()
- MorphyWeights()
- mpl_apply_tipdata()
- mpl_attach_rawdata()
- mpl_attach_symbols()
- mpl_delete_Morphy()
- mpl_delete_rawdata()
- mpl_first_down_recon()
- mpl_first_up_recon()
- mpl_get_charac_weight()
- mpl_get_gaphandl()
- mpl_get_numtaxa()
- mpl_get_num_charac()
- mpl_get_num_internal_nodes()
- mpl_get_symbols()
- mpl_init_Morphy()
- mpl_new_Morphy()
- mpl_second_down_recon()
- mpl_second_up_recon()
- mpl_set_charac_weight()
- mpl_set_num_internal_nodes()
- mpl_set_parsim_t()
- mpl_translate_error()
- mpl_update_lower_root()
- mpl_update_tip()
- NNI()
- PhyDat2Morphy()
- PlotCharacter()
- PrepareDataProfile()
- profiles()
- QuartetResolution()
- RandomMorphyTree()
- RandomTreeScore()
- Ratchet()
- RearrangeEdges()
- referenceTree()
- SingleCharMorphy()
- SiteConcordance()
- SPR()
- StepInformation()
- StopUnlessBifurcating()
- Suboptimality()
- SuccessiveApproximations()
- summary.morphyPtr()
- TBR()
- TBRWarning()
- TreeLength()
- TreeSearch()
- UnloadMorphy()
- WithOneExtraStep()
R Codes
- AdditionTree.R
- Bootstrap.R
- ci-ri.R
- ClusterStrings.R
- Concordance.R
- CustomSearch.R
- data.R
- data_manipulation.R
- ImposeConstraint.R
- IWScore.R
- Jackknife.R
- length_range.R
- MaximizeParsimony.R
- mpl_morphyex.R
- mpl_morphy_objects.R
- mpl_visualise.R
- NNI.R
- PlotCharacter.R
- QuartetResolution.R
- RandomTreeScore.R
- Ratchet.R
- RcppExports.R
- ReleaseQuestions.R
- Sectorial.R
- SPR.R
- SuccessiveApproximations.R
- TBR.R
- TreeSearch_utilities.R
- tree_length.R
- tree_rearrangement.R
- zzz.R
Selected R package: TreeSearch
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