R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- acen_hg19()
- acen_hg38()
- analyze_allele()
- analyze_joint()
- annot_cm()
- annot_segs()
- approx_phi_post()
- approx_theta_post_s2()
- approx_theta_post_s3()
- bulk_example()
- calc_allele_lik_s2()
- calc_allele_lik_s3()
- calc_allele_LLR()
- calc_exp_LLR()
- calc_trans_mat_s7()
- calc_trans_mat_s15()
- check_cols()
- check_matrix()
- chrom_sizes_hg19()
- chrom_sizes_hg38()
- classify_alleles()
- combine_bulk()
- dbbinom()
- df_allele_example()
- dpoilog()
- filter_genes()
- fit_gamma()
- fit_lnpois_cpp()
- fit_ref_sse()
- forward_back_allele()
- gaps_hg19()
- gaps_hg38()
- generate_postfix()
- gene_counts_example()
- get_allele_bulk()
- get_allele_hmm_s2()
- get_allele_hmm_s3()
- get_bulk()
- get_exp_bulk()
- get_trans_probs_s7()
- get_trans_probs_s15()
- gtf_hg19()
- gtf_hg38()
- gtf_mm10()
- likelihood_allele()
- logSumExp()
- l_bbinom()
- l_lnpois()
- plot_bulks()
- plot_psbulk()
- pre_likelihood_hmm()
- ref_hca()
- ref_hca_counts()
- run_allele_hmm_s3()
- run_allele_hmm_s5()
- run_joint_hmm_s7()
- run_joint_hmm_s15()
- segs_example()
- smooth_segs()
- switch_prob_cm()
- theta_hat_seg()
- vcf_meta()
- viterbi_allele()
- viterbi_joint()
- viterbi_joint_mat()
R Codes
Selected R package: hahmmr
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