R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- add_threshold()
- basic_summaries()
- batch_cols()
- batch_vec()
- bayes_int()
- calc_entropy()
- calc_errorlod()
- calc_genoprob()
- calc_geno_freq()
- calc_grid()
- calc_het()
- calc_kinship()
- calc_raw_founder_maf()
- calc_raw_geno_freq()
- calc_raw_het()
- calc_raw_maf()
- calc_sdp()
- cbind.calc_genoprob()
- cbind.scan1()
- cbind.scan1perm()
- cbind.sim_geno()
- cbind.viterbi()
- cbind_expand()
- CCcolors()
- check_cross2()
- chisq_colpairs()
- chr_lengths()
- clean()
- clean_genoprob()
- clean_scan1()
- compare_geno()
- compare_genoprob()
- compare_maps()
- convert2cross2()
- count_xo()
- create_gene_query_func()
- create_snpinfo()
- create_variant_query_func()
- decomp_kinship()
- drop_markers()
- drop_nullmarkers()
- est_herit()
- est_map()
- find_dup_markers()
- find_ibd_segments()
- find_index_snp()
- find_map_gaps()
- find_marker()
- find_markerpos()
- find_peaks()
- fit1()
- fread_csv()
- fread_csv_numer()
- genoprob_to_alleleprob()
- genoprob_to_snpprob()
- get_common_ids()
- get_x_covar()
- guess_phase()
- index_snps()
- insert_pseudomarkers()
- interp_genoprob()
- interp_map()
- invert_sdp()
- locate_xo()
- lod_int()
- map_to_grid()
- mat2strata()
- maxlod()
- maxmarg()
- max_compare_geno()
- max_scan1()
- n_missing()
- plot_coef()
- plot_compare_geno()
- plot_genes()
- plot_genoprob()
- plot_genoprobcomp()
- plot_lodpeaks()
- plot_onegeno()
- plot_peaks()
- plot_pxg()
- plot_scan1()
- plot_sdp()
- plot_snpasso()
- predict_snpgeno()
- print.cross2()
- print.summary.scan1perm()
- probs_to_grid()
- pull_genoprobint()
- pull_genoprobpos()
- pull_markers()
- qtl2-internal()
- qtl2-package()
- qtl2version()
- rbind.calc_genoprob()
- rbind.scan1()
- rbind.scan1perm()
- rbind.sim_geno()
- rbind.viterbi()
- read_cross2()
- read_pheno()
- recode_snps()
- reduce_map_gaps()
- reduce_markers()
- replace_ids()
- scale_kinship()
- scan1()
- scan1blup()
- scan1coef()
- scan1max()
- scan1perm()
- scan1snps()
- sdp2char()
- sim_geno()
- smooth_gmap()
- subset.calc_genoprob()
- subset.cross2()
- subset.sim_geno()
- subset.viterbi()
- subset_scan1()
- summary.cross2()
- summary_compare_geno()
- summary_scan1perm()
- top_snps()
- unsmooth_gmap()
- viterbi()
- write_control_file()
- xpos_scan1()
- zip_datafiles()
R Codes
- add_threshold.R
- align_scan1_map.R
- arg_util.R
- assign_allele_codes.R
- batch_cols.R
- batch_vec.R
- bayes_int.R
- calc_entropy.R
- calc_errorlod.R
- calc_genoprob.R
- calc_genoprob2.R
- calc_geno_freq.R
- calc_grid.R
- calc_het.R
- calc_kinship.R
- calc_raw_summaries.R
- calc_sdp.R
- cbind_calc_genoprob.R
- cbind_expand.R
- cbind_scan1.R
- cbind_sim_geno.R
- cbind_viterbi.R
- CCcolors-data.R
- check_cross2.R
- chisq_colpairs.R
- chr_lengths.R
- clean.R
- clean_genoprob.R
- clean_scan1.R
- cluster_util.R
- compare_geno.R
- compare_genoprob.R
- compare_maps.R
- convert2cross2.R
- count_xo.R
- covariates.R
- create_gene_query_func.R
- create_marker_index.R
- create_snpinfo.R
- create_variant_query_func.R
- decomp_kinship.R
- dim_calc_genoprob.R
- drop_markers.R
- est_herit.R
- est_map.R
- find_common_ids.R
- find_dup_markers.R
- find_ibd_segments.R
- find_index_snp.R
- find_map_gaps.R
- find_marker.R
- find_markerpos.R
- find_peaks.R
- find_peaks_and_bayesint.R
- find_peaks_and_lodint.R
- fit1.R
- fit1_pg.R
- fread_csv.R
- fread_csv_numer.R
- genoprob_col2drop.R
- genoprob_to_alleleprob.R
- genoprob_to_snpprob.R
- get_common_ids.R
- get_x_covar.R
- guess_phase.R
- hmm_util.R
- index_snps.R
- insert_pseudomarkers.R
- interp_genoprob.R
- interp_map.R
- is_phase_known.R
- is_same.R
- kinship_util.R
- locate_xo.R
- lod_int.R
- map_functions.R
- map_to_grid.R
- mat2strata.R
- maxmarg.R
- max_scan1.R
- myround.R
- n_missing.R
- plot_coef.R
- plot_coef_and_lod.R
- plot_genes.R
- plot_genoprob.R
- plot_genoprobcomp.R
- plot_lodpeaks.R
- plot_onegeno.R
- plot_peaks.R
- plot_pxg.R
- plot_scan1.R
- plot_sdp.R
- plot_snpasso.R
- plot_snpasso_and_genes.R
- plot_snpasso_and_sdp.R
- plot_snpasso_sdp_and_genes.R
- predict_snpgeno.R
- probs_to_grid.R
- pull_genoprobint.R
- pull_genoprobpos.R
- qtl2-internal.R
- qtl2-package.R
- qtl2version.R
- rbind_calc_genoprob.R
- rbind_scan1.R
- rbind_sim_geno.R
- rbind_viterbi.R
- rcbind_scan1perm.R
- RcppExports.R
- read_cross2.R
- read_pheno.R
- recode_snps.R
- reduce_map_gaps.R
- reduce_markers.R
- reduce_to_index_snps.R
- replace_ids.R
- scale_kinship.R
- scan1.R
- scan1blup.R
- scan1blup_pg.R
- scan1coef.R
- scan1coef_pg.R
- scan1max.R
- scan1max_pg.R
- scan1perm.R
- scan1perm_pg.R
- scan1snps.R
- scan1_binary.R
- scan1_pg.R
- sim_geno.R
- sim_geno2.R
- smooth_gmap.R
- snpprob_from_cross.R
- subset_calc_genoprob.R
- subset_chr.R
- subset_cross2.R
- subset_ind.R
- subset_kinship.R
- subset_scan1.R
- subset_sim_geno.R
- subset_viterbi.R
- summary_cross2.R
- summary_scan1perm.R
- swap_colname.R
- test_util.R
- top_snps.R
- unsmooth_gmap.R
- viridis.R
- viterbi.R
- viterbi2.R
- weights_util.R
- write_control_file.R
- xpos_scan1.R
- zip_datafiles.R
Selected R package: qtl2
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