R Packages that start with:
A . B . C . D . E . F . G . H . I . J . K . L . M . N . O . P . Q . R . S . T . U . V . W . X . Y . Z .
Functions
- a.starting.point()
- add.cim.covar()
- add.threshold()
- addcovarint()
- addint()
- addloctocross()
- addmarker()
- addpair()
- addqtl()
- addtoqtl()
- allchrsplits()
- argmax.geno()
- arithscan()
- arithscanperm()
- badorder()
- bayesint()
- bristle3()
- bristleX()
- c.cross()
- c.scanone()
- c.scanoneperm()
- c.scantwo()
- c.scantwoperm()
- calc.errorlod()
- calc.genoprob()
- calc.penalties()
- cbind.scanoneperm()
- cbind.scantwoperm()
- checkAlleles()
- chrlen()
- chrnames()
- cim()
- clean.cross()
- clean.scantwo()
- cleanGeno()
- comparecrosses()
- comparegeno()
- compareorder()
- condense.scantwo()
- convert.map()
- convert.scanone()
- convert.scantwo()
- convert2riself()
- convert2risib()
- convert2sa()
- countXO()
- drop.dupmarkers()
- drop.markers()
- drop.nullmarkers()
- dropfromqtl()
- droponemarker()
- effectplot()
- effectscan()
- est.map()
- est.rf()
- fake.4way()
- fake.bc()
- fake.f2()
- fill.geno()
- find.flanking()
- find.marker()
- find.markerpos()
- find.pheno()
- find.pseudomarker()
- findDupMarkers()
- findmarkerindex()
- find_large_intervals()
- fitqtl()
- fitstahl()
- flip.order()
- formLinkageGroups()
- formMarkerCovar()
- geno.crosstab()
- geno.image()
- geno.table()
- getid()
- groupclusteredheatmap()
- hyper()
- inferFounderHap()
- inferredpartitions()
- interpPositions()
- jittermap()
- listeria()
- locateXO()
- locations()
- lodint()
- makeqtl()
- map2table()
- map10()
- mapthis()
- markerlrt()
- markernames()
- max.scanone()
- max.scanPhyloQTL()
- max.scantwo()
- movemarker()
- MQM()
- mqmaugment()
- mqmautocofactors()
- mqmextractmarkers()
- mqmfind.marker()
- mqmgetmodel()
- mqmpermutation()
- mqmplotcircle()
- mqmplotcistrans()
- mqmplotclusteredheatmap()
- mqmplotcofactors()
- mqmplotdirectedqtl()
- mqmplotheatmap()
- mqmplotmultitrait()
- mqmplotpermutations()
- mqmplotsingletrait()
- mqmprocesspermutation()
- mqmscan()
- mqmscanall()
- mqmscanfdr()
- mqmsetcofactors()
- mqmtestnormal()
- multitrait()
- nchr()
- nind()
- nmar()
- nmissing()
- nphe()
- nqrank()
- nqtl()
- ntyped()
- nullmarkers()
- orderMarkers()
- phenames()
- pickMarkerSubset()
- plot.comparegeno()
- plot.cross()
- plot.errorlod()
- plot.geno()
- plot.info()
- plot.map()
- plot.missing()
- plot.pheno()
- plot.pxg()
- plot.qtl()
- plot.rf()
- plot.rfmatrix()
- plot.scanone()
- plot.scanoneboot()
- plot.scanoneperm()
- plot.scanPhyloQTL()
- plot.scantwo()
- plot.scantwoperm()
- plotLodProfile()
- plotModel()
- pull.argmaxgeno()
- pull.draws()
- pull.geno()
- pull.genoprob()
- pull.map()
- pull.markers()
- pull.pheno()
- pull.rf()
- qtl-internal()
- qtlversion()
- read.cross()
- readMWril()
- reduce2grid()
- refineqtl()
- reorderqtl()
- replace.map()
- replacemap.scanone()
- replacemap.scantwo()
- replaceqtl()
- rescalemap()
- ripple()
- scanone()
- scanoneboot()
- scanonevar.meanperm()
- scanonevar()
- scanonevar.varperm()
- scanPhyloQTL()
- scanqtl()
- scantwo()
- scantwopermhk()
- shiftmap()
- sim.cross()
- sim.geno()
- sim.map()
- simFounderSnps()
- simPhyloQTL()
- simulateMissingData()
- stepwiseqtl()
- strip.partials()
- subset.cross()
- subset.map()
- subset.scanone()
- subset.scanoneperm()
- subset.scantwo()
- subset.scantwoperm()
- summary.comparegeno()
- summary.cross()
- summary.fitqtl()
- summary.map()
- summary.qtl()
- summary.ripple()
- summary.scanone()
- summary.scanoneboot()
- summary.scanoneperm()
- summary.scanPhyloQTL()
- summary.scantwo()
- summary.scantwo.old()
- summary.scantwoperm()
- switch.order()
- switchAlleles()
- table2map()
- top.errorlod()
- totmar()
- transformPheno()
- tryallpositions()
- typingGap()
- write.cross()
- xaxisloc.scanone()
R Codes
- add.cim.covar.R
- addmarker.R
- addqtl.R
- add_threshold.R
- argmax.geno.R
- arithscan.R
- bcsft.R
- calc.genoprob.R
- calc.pairprob.R
- cim.R
- comparegeno.R
- compareorder.R
- countXO.R
- discan.R
- droponemarker.R
- effectplot.R
- effectscan.R
- errorlod.R
- est.map.R
- est.rf.R
- find_large_intervals.R
- fitqtl.R
- fitstahl.R
- inferFounderHap.R
- interpPositions.R
- makeqtl.R
- map_construction.R
- markerlrt.R
- mqmaugment.R
- mqmcircleplot.R
- mqmcofactors.R
- mqmpermutation.R
- mqmplots.R
- mqmprepare.R
- mqmscan.R
- mqmscanall.R
- mqmsnow.R
- mqmutil.R
- phyloqtl_scan.R
- phyloqtl_sim.R
- phyloqtl_util.R
- pickMarkerSubset.R
- plot.R
- plot.scanone.R
- plot.scantwo.R
- plotModel.R
- plotperm.R
- pull_stuff.R
- qtlcart_io.R
- read.cross.csv.R
- read.cross.csvs.R
- read.cross.gary.R
- read.cross.karl.R
- read.cross.mm.R
- read.cross.mq.R
- read.cross.qtx.R
- read.cross.R
- read.cross.tidy.R
- readMWril.R
- refineqtl.R
- replacemap.R
- ril48_reorg.R
- ripple.R
- scanone.R
- scanoneboot.R
- scanonevar.meanperm.R
- scanonevar.R
- scanonevar.varperm.R
- scanqtl.R
- scantwo.R
- scantwopermhk.R
- sim.geno.R
- simulate.R
- sim_ril.R
- stepwiseqtl.R
- stepwiseqtlX.R
- summary.cross.R
- summary.scanone.R
- summary.scantwo.old.R
- summary.scantwo.R
- transformPheno.R
- tryallpositions.R
- util.R
- vbscan.R
- viridis.R
- write.cross.mq.R
- write.cross.qtab.R
- write.cross.R
- xchr.R
Selected R package: qtl
Click on the specific functions, references or examples using the links on the left
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