colors.in.classes.folder | R Documentation |
Compute colors in classes distribution for folders
colors.in.classes.folder( path, color1, color2 = NULL, N = 7, type = "intensity", thresh1 = NULL, thresh2 = NULL, sd1 = 2, sd2 = 2, col1 = "green", col2 = "red", cores = 1, verbose = FALSE )
path |
Path to root folder |
color1 |
Image of first color |
color2 |
Image of second color |
N |
Maximum number of classes |
type |
Type of spot definition, see details |
thresh1 |
Threshold for first color image |
thresh2 |
Threshold for second color image |
sd1 |
For automatic threshold, that is: mean(color1)+sd1*sd(color1) |
sd2 |
For automatic threshold of color2 |
col1 |
Name of color 1 |
col2 |
Name of color 2 |
cores |
Number of cores used in parallel, cores=1 implies no parallelization |
verbose |
verbose mode |
Results are in folder colorsinclasses