| gelmanplot.mcmc.list | R Documentation |
This plot shows the evolution of Gelman and Rubin's shrink factor as the number of iterations increases. The code is adapted from the R package coda.
## S3 method for class 'mcmc.list' gelmanplot( x, P, confidence = 0.95, max.bins = 50, autoburnin = TRUE, greek = FALSE, ... )
x |
An mcmc object |
P |
Optional dataframe describing the parameters to plot and their respective names |
confidence |
The coverage probability of the confidence interval for the potential scale reduction factor |
max.bins |
Maximum number of bins, excluding the last one. |
autoburnin |
Logical flag indicating whether only the second half of the series should be used in the computation. If set to TRUE (default) and start(x) is less than end(x)/2 then start of series will be adjusted so that only second half of series is used. |
greek |
Logical value indicating whether parameter labels have to be parsed to get Greek letters. Defaults to false. |
... |
Additional arguments which are currently not used |
A ggplot object.
An object of class ggplot
Thomas Debray <thomas.debray@gmail.com>