R: Dumps patient from ATLAS to a file on disk

atlas.dump

R Documentation

Dumps patient from ATLAS to a file on disk

Description

Dumps patient from ATLAS to a file on disk

Usage

atlas.dump(connection, patient_id, path, selection_query = NULL,
  contains_start = FALSE, contains_end = FALSE)

Arguments

`connection`	connection object returned from connect(url) function
`patient_id`	numerical id of the patient
`path`	path where to store the generated files
`selection_query`	returns only the part of patient's data that intersects with the result of the selection_query
`contains_start`	the dumped time interval's start has to be intersecting the selection_query
`contains_end`	the dumped time interval's end has to be intersecting the selection_query

Value

data frame containing patient IDs and time intervals (optional)

Examples

atlas.dump(atlas.connect('http://localhost:8080'), 123, '/path/to/dump/files/')
atlas.dump(atlas.connect('http://localhost:8080'), 123, '/path/', 'ICD9=250.50', TRUE, TRUE)